Derives exact enumerations, closed-form differences, and a universal hypergeometric law for orchard phylogenetic networks via generating functions and the Chang-Fuchs theorem, extending prior tables to resolve cases like 9 leaves.
Counting Spinal Tree-Child Networks via Word Encodings and Generating Functions
1 Pith paper cite this work. Polarity classification is still indexing.
abstract
We study the enumeration of spinal tree-child phylogenetic networks, a rigid family of tree-child networks in which all internal vertices lie on a single root--to--leaf path. We provide two complementary combinatorial frameworks. First, we introduce a word model: unlabeled spinal networks correspond to a suitable class of restricted words with fixed multiplicities, taken modulo a simple relabeling equivalence, which yields an explicit closed enumeration. Second, we develop a symbolic-method approach based on a marked version of trees that admits a clean recursive specification; its boxed-product translation leads to a solvable bivariate generating function and a direct derivation of the coefficients.
fields
math.CO 1years
2026 1verdicts
UNVERDICTED 1representative citing papers
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Exact Enumeration of Phylogenetic Networks: The Tree-Child, Reticulation-Visible and Orchard Hierarchy
Derives exact enumerations, closed-form differences, and a universal hypergeometric law for orchard phylogenetic networks via generating functions and the Chang-Fuchs theorem, extending prior tables to resolve cases like 9 leaves.