A methodological review of post-2018 evidence-aware protein complex detection methods concludes that transparent graph-based approaches offer the best plausibility-reproducibility tradeoff while calling for harmonized benchmarks and overlap-aware metrics.
DPCMNE: Detecting protein complexes from protein- protein interaction networks via multi-level network embedding,
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Evidence-Aware Protein Complex Detection: Methods, Benchmarks, and Reproducibility Challenges
A methodological review of post-2018 evidence-aware protein complex detection methods concludes that transparent graph-based approaches offer the best plausibility-reproducibility tradeoff while calling for harmonized benchmarks and overlap-aware metrics.