PATH gene embeddings in a graph transformer achieve 0.8766 F1 on pancancer metastasis prediction (8.8% over SOTA) and identify disease-state pathway rewiring.
High SOAT1 expression associated with lymph node metastasis, Gleason score, and shorter BCR-free survival (HR 2.40, p<0.001) in 305 high-risk PCa patients
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Graph Transformer-Based Pathway Embedding for Cancer Prognosis
PATH gene embeddings in a graph transformer achieve 0.8766 F1 on pancancer metastasis prediction (8.8% over SOTA) and identify disease-state pathway rewiring.