cuSBF delivers a GPU-accelerated Super Bloom Filter for genomic sequences with up to 9.1x insertion and 7.7x query speedups over GPU baselines and high SM utilization via sequence-aware tiling.
NGSReadsTreatment – A Cuckoo Filter-based Tool for Removing Duplicate Reads in NGS Data,
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cuSBF: A Minimizer-Aware Bloom Filter for Genomic Sequence Data on Modern GPUs
cuSBF delivers a GPU-accelerated Super Bloom Filter for genomic sequences with up to 9.1x insertion and 7.7x query speedups over GPU baselines and high SM utilization via sequence-aware tiling.