PepSpecBench is a unified benchmark that standardizes preprocessing, uses backbone-disjoint splits to prevent leakage, and adds multi-species plus perturbation tests for peptide MS/MS prediction models.
Prosit Transformer: A transformer for prediction of MS2 spectrum intensities.Journal of Proteome Research, 21(5):1359–1364
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PepSpecBench: A Unified Evaluation Benchmark for Peptide Tandem Mass Spectrometry Prediction
PepSpecBench is a unified benchmark that standardizes preprocessing, uses backbone-disjoint splits to prevent leakage, and adds multi-species plus perturbation tests for peptide MS/MS prediction models.