LOGICA adds context to pretrained biological LMs via logit-space contrastive alignment with gated adapters, improving AUC on held-out drug-resistance mutation ranking from ~0.55 to ~0.65 while preserving token likelihoods.
Nature Biotechnology , volume =
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Introduces graph-to-image prediction of per-node dynamic stability landscapes in oscillator networks from topology, releases two 10k-graph datasets, and shows GNN-CNN models achieve good accuracy with cross-size generalization.
Boltz-2 and fine-tuned DrugFormDTA lead ML-based binding prediction while GNINA leads docking tools on a cleaned antiviral dataset, with performance varying by viral protein.
citing papers explorer
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Contextualizing Biological Language Models across Modalities via Logit-Space Contrastive Alignment
LOGICA adds context to pretrained biological LMs via logit-space contrastive alignment with gated adapters, improving AUC on held-out drug-resistance mutation ranking from ~0.55 to ~0.65 while preserving token likelihoods.
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Learning Dynamic Stability Landscapes in Synchronization Networks
Introduces graph-to-image prediction of per-node dynamic stability landscapes in oscillator networks from topology, releases two 10k-graph datasets, and shows GNN-CNN models achieve good accuracy with cross-size generalization.
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Benchmarking open-source tools for in silico antiviral drug discovery
Boltz-2 and fine-tuned DrugFormDTA lead ML-based binding prediction while GNINA leads docking tools on a cleaned antiviral dataset, with performance varying by viral protein.