scpFormer is a panel-agnostic transformer model that creates unified cell representations from variable single-cell proteomic panels via continuous embeddings and ESM integration, supporting batch integration, clustering, in silico expansion, and transfer to bulk tasks.
Science387, 850–858 (2025)
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DrugPlayGround is a new benchmark framework for evaluating LLMs on text-based descriptions of physiochemical drug characteristics, synergism, drug-protein interactions, and physiological responses.
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scpFormer: A Foundation Model for Unified Representation and Integration of the Single-Cell Proteomics
scpFormer is a panel-agnostic transformer model that creates unified cell representations from variable single-cell proteomic panels via continuous embeddings and ESM integration, supporting batch integration, clustering, in silico expansion, and transfer to bulk tasks.
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DrugPlayGround: Benchmarking Large Language Models and Embeddings for Drug Discovery
DrugPlayGround is a new benchmark framework for evaluating LLMs on text-based descriptions of physiochemical drug characteristics, synergism, drug-protein interactions, and physiological responses.