Hyperiax supplies JAX-based tree algorithms that make BFFG feasible for parameter inference and ancestral state reconstruction from landmark shapes on phylogenies with hundreds of tips.
Landmark matching via large deformation diffeomorphisms
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Hyperiax and Phylogenetic Inference from Shape Data
Hyperiax supplies JAX-based tree algorithms that make BFFG feasible for parameter inference and ancestral state reconstruction from landmark shapes on phylogenies with hundreds of tips.