A KL-divergence metric on inter-motif distance distributions in a centeny representation ranks the accuracy of human T2T genome assemblies at centromeres.
and Logsdon, Glennis A
2 Pith papers cite this work. Polarity classification is still indexing.
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The anti-lexicographic SUS-anchor achieves sampling densities less than 1% above the lower bound for alphabet size 4 and k=1, substantially outperforming bidirectional anchors.
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A mathematical framework for centromere-aware evaluation of human genome assemblies
A KL-divergence metric on inter-motif distance distributions in a centeny representation ranks the accuracy of human T2T genome assemblies at centromeres.
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The anti-lexicographic SUS-anchor: a near-optimal k=1 sampling scheme
The anti-lexicographic SUS-anchor achieves sampling densities less than 1% above the lower bound for alphabet size 4 and k=1, substantially outperforming bidirectional anchors.