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arxiv: physics/0511061 · v1 · submitted 2005-11-07 · ⚛️ physics.chem-ph · physics.comp-ph

Using binding free energy to guide ligand design

classification ⚛️ physics.chem-ph physics.comp-ph
keywords energyfreebindingdesignligandproteinusedaffinity
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The molecular distributions obtained from canonical Monte Carlo simulations can be used to find an approximate interaction energy. This serves as the basis of a method for estimating the binding free energy for a ligand to a protein which enables the free energy to be used to direct the design of ligands which bind to a protein with high affinity.

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