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Equivariant graph neural networks for fast electron density estimation of molecules, liquids, and solids

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arxiv 2112.00652 v2 pith:Y7DD2SWS submitted 2021-12-01 physics.comp-ph stat.ML

classification physics.comp-phstat.ML
keywords densityelectrongraphmodelmoleculesaccuracybeyondenergy
verification ladder T0 review T1 audit T2 compute T3 formal
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abstract

Electron density $\rho(\vec{r})$ is the fundamental variable in the calculation of ground state energy with density functional theory (DFT). Beyond total energy, features and changes in $\rho(\vec{r})$ distributions are often used to capture critical physicochemical phenomena in functional materials. We present a machine learning framework for the prediction of $\rho(\vec{r})$. The model is based on equivariant graph neural networks and the electron density is predicted at special query point vertices that are part of the message passing graph, but only receive messages. The model is tested across multiple data sets of molecules (QM9), liquid ethylene carbonate electrolyte (EC) and LixNiyMnzCo(1-y-z)O2 lithium ion battery cathodes (NMC). For QM9 molecules, the accuracy of the proposed model exceeds typical variability in $\rho(\vec{r})$ obtained from DFT done with different exchange-correlation functionals. The accuracy on all three datasets is beyond state of the art and the computation time is orders of magnitude faster than DFT.

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Reviewed papers in the Pith corpus that reference this work. Sorted by Pith novelty score. Full citation record

  1. ED-DiT: Physics-Guided Diffusion Pretraining for Transferable Molecular Representations from Electron Density

    cs.LG 2026-08 conditional novelty 6.0 of 10

    ED-DiT pretrains a diffusion transformer on electron-density point clouds with a physical electron-number constraint, and the resulting encoder outperforms scratch models across six molecular tasks.

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