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SPICE, A Dataset of Drug-like Molecules and Peptides for Training Machine Learning Potentials

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arxiv 2209.10702 v2 pith:YX67P7LI submitted 2022-09-21 physics.chem-ph cs.LGq-bio.BM

classification physics.chem-phcs.LGq-bio.BM
keywords moleculespotentialsdatasetlearningmachinechemicaldrug-likemolecular
verification ladder T0 review T1 audit T2 compute T3 formal
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Machine learning potentials are an important tool for molecular simulation, but their development is held back by a shortage of high quality datasets to train them on. We describe the SPICE dataset, a new quantum chemistry dataset for training potentials relevant to simulating drug-like small molecules interacting with proteins. It contains over 1.1 million conformations for a diverse set of small molecules, dimers, dipeptides, and solvated amino acids. It includes 15 elements, charged and uncharged molecules, and a wide range of covalent and non-covalent interactions. It provides both forces and energies calculated at the {\omega}B97M-D3(BJ)/def2-TZVPPD level of theory, along with other useful quantities such as multipole moments and bond orders. We train a set of machine learning potentials on it and demonstrate that they can achieve chemical accuracy across a broad region of chemical space. It can serve as a valuable resource for the creation of transferable, ready to use potential functions for use in molecular simulations.

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Cited by 1 Pith paper

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  1. Implicit Delta Learning of High Fidelity Neural Network Potentials

    physics.chem-ph 2024-12 conditional novelty 6.0 of 10

    IDLe, a multi-task training strategy with fidelity-specific prediction heads on a shared representation, matches high-fidelity NNP energy accuracy while using up to 50x less high-fidelity QM data.

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