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Goal-conditioned GFlowNets for Controllable Multi-Objective Molecular Design

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arxiv 2306.04620 v2 pith:2J4K5Y6I submitted 2023-06-07 cs.LG q-bio.BM

classification cs.LGq-bio.BM
keywords molecularcontrollabledesignfrontgoal-conditionedmulti-objectiveobjectivepareto
verification ladder T0 review T1 audit T2 compute T3 formal
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In recent years, in-silico molecular design has received much attention from the machine learning community. When designing a new compound for pharmaceutical applications, there are usually multiple properties of such molecules that need to be optimised: binding energy to the target, synthesizability, toxicity, EC50, and so on. While previous approaches have employed a scalarization scheme to turn the multi-objective problem into a preference-conditioned single objective, it has been established that this kind of reduction may produce solutions that tend to slide towards the extreme points of the objective space when presented with a problem that exhibits a concave Pareto front. In this work we experiment with an alternative formulation of goal-conditioned molecular generation to obtain a more controllable conditional model that can uniformly explore solutions along the entire Pareto front.

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Cited by 2 Pith papers

Reviewed papers in the Pith corpus that reference this work. Sorted by Pith novelty score. Full citation record

  1. Beyond the Proxy: Trajectory-Distilled Guidance for Offline GFlowNet Training

    cs.LG 2025-05 conditional novelty 6.0 of 10

    TD-GFN uses IRL-derived edge rewards to prune the environment DAG and sample backward trajectories, training offline GFlowNets directly from ground-truth terminal rewards without a proxy reward model.

  2. Virtual Cells: Predict, Explain, Discover

    cs.LG 2025-05 conditional novelty 6.0 of 10

    A perspective proposing that therapeutically useful virtual cells must predict, explain, and discover, with a framework of capabilities and performance levels to guide their development.

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