Pith. sign in

Paper Citation Record · LEDGER

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation

As of 12 August 2026, this Paper Citation Record lists 59 of 59 outbound references and 2 inbound Pith citation observations for arXiv:2411.16644.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2411.16644 v1

Coverage vector

measured 59 of 59 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-12T12:56:55.273074Z

measured 61 of 61 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-12T06:34:41.77262+00:00

measured 2 of 2 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-08-01T12:34:59.774345Z

measured 1 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: arxiv_reference, observed 2026-08-05T02:28:24.338817Z

Reference resolution

59 of 59 outbound references displayed

  • verified exact3
  • verified fuzzy14
  • unresolved42
  • parse uncertain0
  • malformed identifier0
  • metadata mismatch0

External citation measurements

2
arxiv_reference, observed 2026-08-05T02:28:24.338817Z

Outbound references

Observation 78048450-2db3-43fc-9997-d1cb17bfc589 · outbound

This paper cites A dual diffusion model enables 3D molecule generation and lead optimization based on target pockets.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation A dual diffusion model enables 3D molecule generation and lead optimization based on target pockets

Reference 1

Resolution
unresolved
no resolver link, observed 2026-08-12T12:56:55.001203Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T12:56:55.001203Z digest=sha256:2f7665e4e2361dd73c4b360bed5a5a741b0ff7590cb6f76d33d38e3ee410b8ca

Observation 4f4d9548-307c-4a76-aa6c-9d67675137bc · outbound

This paper cites 3D Equivariant Diffusion for Target-Aware Molecule Generation and Affinity Prediction, March.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation 3D Equivariant Diffusion for Target-Aware Molecule Generation and Affinity Prediction, March

Reference 2

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T12:56:56.280593Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.

source=pdf_text observed=2026-08-12T12:56:55.006654Z digest=sha256:62de79d04b84428543288b5b8274e4b4b6d31fb965e73a8e8078c9312591cb75

Observation dde2a605-7f86-4e10-9bb6-37a7fcac384a · outbound

This paper cites Structure-based Drug Design with Equivariant Diffusion Models.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation Structure-based Drug Design with Equivariant Diffusion Models

Reference 3

Resolution
unresolved
no resolver link, observed 2026-08-12T12:56:55.016817Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T12:56:55.016817Z digest=sha256:2e7e4dbdee3193c2a626ea6ac7806bdf0f24cfeb584bcbb7620f930160095484

Observation ca6643ec-7f6a-4438-a34b-87ced7092b80 · outbound

This paper cites Pocket2Mol: Efficient Molecular Sampling Based on 3D Protein Pockets.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation Pocket2Mol: Efficient Molecular Sampling Based on 3D Protein Pockets

Reference 4

Resolution
unresolved
no resolver link, observed 2026-08-12T12:56:55.022005Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T12:56:55.022005Z digest=sha256:d2d259c886b8873fa99e1c516bd7938765f7ac0b3a898f3948b5bff7bb1a0ca5

Observation 17b38e07-b8ce-4d34-b2b6-689dc445f932 · outbound

This paper cites Generating 3D Molecules for Target Protein Binding.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation Generating 3D Molecules for Target Protein Binding

Reference 5

Resolution
unresolved
no resolver link, observed 2026-08-12T12:56:55.026953Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T12:56:55.026953Z digest=sha256:29e357c9c4f3fb63f19a3c0695549cb709ba9a936d91356215750e6de8e17499

Observation ddc556c5-74c4-4956-ad12-4f03fc29f728 · outbound

This paper cites DiffHopp: A Graph Diffusion Model for Novel Drug Design via Scaffold Hopping.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation DiffHopp: A Graph Diffusion Model for Novel Drug Design via Scaffold Hopping

Reference 6

Resolution
unresolved
no resolver link, observed 2026-08-12T12:56:55.031827Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T12:56:55.031827Z digest=sha256:c721b27dc8684083519ff6e62b578d7e35fb69223bcd872b2b6f3d3d4d02087a

Observation 9ba5a7d4-209b-4162-8eba-2ef26621f61c · outbound

This paper cites Equivariant 3D-conditional diffusion model for molecular linker design.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation Equivariant 3D-conditional diffusion model for molecular linker design

Reference 7

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T12:56:56.266357Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.

source=pdf_text observed=2026-08-12T12:56:55.037120Z digest=sha256:19e9674349b3d9edfd49ccf6e6a1abd61900ebf071e6376f9cd58dbdb24ec478

Observation 1e9ac724-9c6e-4731-864b-ba96891c98bf · outbound

This paper cites Accelerating Inference in Molecular Diffusion Models with La- tent Representations of Protein Structure.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation Accelerating Inference in Molecular Diffusion Models with La- tent Representations of Protein Structure

Reference 8

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T12:56:56.252163Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.

source=pdf_text observed=2026-08-12T12:56:55.046423Z digest=sha256:bb5d1a0fed9a4b7210f052ffa9a2e504a980ce470f8d204def8d8f275952ce8e

Observation 8164dbd0-15b4-4dc8-a30a-56f90135f4de · outbound

This paper cites Watson, David Juergens, Nathaniel R.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation Watson, David Juergens, Nathaniel R

Reference 9

Resolution
unresolved
no resolver link, observed 2026-08-12T12:56:55.051241Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T12:56:55.051241Z digest=sha256:8016b7656cdc0cd6011601bca37dd6b283ef63325e5e9a8a0f8fd5a5958322a9

Observation 1c11c527-4b28-4f82-993d-36cf6d231d7c · outbound

This paper cites Bennett, Joseph L.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation Bennett, Joseph L

Reference 10

Resolution
verified exact
doi, observed 2026-08-12T12:56:55.366297Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.

source=pdf_text observed=2026-08-12T12:56:55.055911Z digest=sha256:75f0e5220fd4ec9c075b1bb3e22d813eeea5cade0486af4380ad9780a638abf7

Observation 200ff803-7f7e-41d4-bdaf-3b312d7c8569 · outbound

This paper cites Ingraham, Max Baranov, Zak Costello, Karl W.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation Ingraham, Max Baranov, Zak Costello, Karl W

Reference 11

Resolution
unresolved
no resolver link, observed 2026-08-12T12:56:55.060269Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T12:56:55.060269Z digest=sha256:51f690d4a7a0cc732348a099d84a8e3554ffaa6041aedf1d1f63c201db61e3ef

Observation 21d585cc-9cda-4b7d-aead-63d262642106 · outbound

This paper cites MatterGen: a generative model for inorganic materials design, January.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation MatterGen: a generative model for inorganic materials design, January

Reference 12

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T12:56:56.219205Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.

source=pdf_text observed=2026-08-12T12:56:55.064654Z digest=sha256:75281ca391454f7edeeb76a010658a38187ea5d302cbc114df4becde1ee32234

Observation cb9cdc2b-602c-4057-8e49-6577aa65eae0 · outbound

This paper cites Deep Unsupervised Learning using Nonequilibrium Thermodynamics.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation Deep Unsupervised Learning using Nonequilibrium Thermodynamics

Reference 13

Resolution
unresolved
no resolver link, observed 2026-08-12T12:56:55.074487Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T12:56:55.074487Z digest=sha256:a1493f496f5acaffd141313cd0541b0d45e1140660db9af9a3b678a7f1e40804

Observation edace65f-422f-415e-a2a3-fdc39b0a32d3 · outbound

This paper cites Denoising Diffusion Probabilistic Models, December.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation Denoising Diffusion Probabilistic Models, December

Reference 14

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T12:56:56.204191Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.

source=pdf_text observed=2026-08-12T12:56:55.079146Z digest=sha256:6c3b3741aa0bda852c816708b04460474ccee725745db72bbfa27ed3113f36fe

Observation 0d90536d-621d-4880-b936-b69289ec26e0 · outbound

This paper cites MatterGen: a generative model for inorganic materials design.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation MatterGen: a generative model for inorganic materials design

Reference 15

Resolution
unresolved
no resolver link, observed 2026-08-12T12:56:55.069206Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T12:56:55.069206Z digest=sha256:9dfae92057e64f5a79059154d8509ab5e0fabb46685901b1558b2946f8ecedc6

Observation 179d2083-1cf7-4176-b05b-295b1416445b · outbound

This paper cites Flow Matching for Generative Modeling.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation Flow Matching for Generative Modeling

Reference 16

Resolution
unresolved
no resolver link, observed 2026-08-12T12:56:55.093616Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T12:56:55.093616Z digest=sha256:e8a8cfede3aca2bd3ebcf0b34871323bc2723b7edf616ec517582e35fc33f028

Observation 8a63baf2-02a2-4186-8053-d0c1d18567da · outbound

This paper cites Improving and generalizing flow-based generative models with minibatch optimal transport.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation Improving and generalizing flow-based generative models with minibatch optimal transport

Reference 17

Resolution
unresolved
no resolver link, observed 2026-08-12T12:56:55.098191Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T12:56:55.098191Z digest=sha256:d92a23616064f9d5207cec6c29289b312efd8df80dfb0fdb30f58d13ae2fe450

Observation 393011e0-8202-4db5-9ff0-8a560d57703c · outbound

This paper cites Stochastic Interpolants: A Unifying Framework for Flows and Diffusions.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation Stochastic Interpolants: A Unifying Framework for Flows and Diffusions

Reference 18

Resolution
unresolved
no resolver link, observed 2026-08-12T12:56:55.102685Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T12:56:55.102685Z digest=sha256:666bfb093fdeca44a7b3977c07e50fa0de4e8c2ad532c94134fdd8a3c16850a2

Observation e289612b-75bf-41ea-b789-00f57290873e · outbound

This paper cites Score-Based Generative Modeling through Stochastic Differential Equations.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation Score-Based Generative Modeling through Stochastic Differential Equations

Reference 19

Resolution
unresolved
no resolver link, observed 2026-08-12T12:56:55.088320Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T12:56:55.088320Z digest=sha256:a89371a1583feb2c5b0765bd9175e08354cc6f6a0ffb1c6e70722c2026bffe89

Observation 10b25e49-d985-4937-a14f-a8f03f9cb58d · outbound

This paper cites SiT: Exploring Flow and Diffusion-based Generative Models with Scalable Interpolant Transformers.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation SiT: Exploring Flow and Diffusion-based Generative Models with Scalable Interpolant Transformers

Reference 20

Resolution
unresolved
no resolver link, observed 2026-08-12T12:56:55.111692Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T12:56:55.111692Z digest=sha256:640810498ffdac69e117448b297acc0abec6070ad8940dff53a3b2629870e1de

Observation d494c1e5-06aa-44df-8bd8-1d8ec501924a · outbound

This paper cites SE(3)-Stochastic Flow Matching for Protein Backbone Generation, April.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation SE(3)-Stochastic Flow Matching for Protein Backbone Generation, April

Reference 21

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T12:56:56.189652Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.

source=pdf_text observed=2026-08-12T12:56:55.116346Z digest=sha256:69efe71bf5444432537d49bf6c22546c92f33e436b60f401ea34d5ed76b71201

Observation e4cc450d-a3ac-4e1e-8428-25beb4c0a2bc · outbound

This paper cites Fast protein backbone generation with SE(3) flow matching.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation Fast protein backbone generation with SE(3) flow matching

Reference 22

Resolution
unresolved
no resolver link, observed 2026-08-12T12:56:55.125850Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T12:56:55.125850Z digest=sha256:6a214d5c314fcde7e1d1e98c9e45920cec9f4c6a85a210e1f561a3dee6f3e5f4

Observation 675a98e3-5707-4100-aa46-8ce165e3d0af · outbound

This paper cites Flow Straight and Fast: Learning to Generate and Transfer Data with Rectified Flow.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation Flow Straight and Fast: Learning to Generate and Transfer Data with Rectified Flow

Reference 23

Resolution
unresolved
no resolver link, observed 2026-08-12T12:56:55.107281Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T12:56:55.107281Z digest=sha256:d28a4ed274f1271230d750a432c12196c2e80a0826c643f74d008bb32cf7875f

Observation 9e9039de-68ec-4330-b21a-21def85899e1 · outbound

This paper cites Mixed Continuous and Categorical Flow Matching for 3D De Novo Molecule Generation.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation Mixed Continuous and Categorical Flow Matching for 3D De Novo Molecule Generation

Reference 24

Resolution
unresolved
no resolver link, observed 2026-08-12T12:56:55.135203Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T12:56:55.135203Z digest=sha256:8295a946658dbf9b59d61ba4ae92df0e7f21b6949472a45366768e590f3672ce

Observation f2155be4-d109-42d4-baca-a982f0ad2662 · outbound

This paper cites Fisher Flow Matching for Generative Modeling over Discrete Data, May.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation Fisher Flow Matching for Generative Modeling over Discrete Data, May

Reference 25

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T12:56:56.175170Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.

source=pdf_text observed=2026-08-12T12:56:55.140168Z digest=sha256:231fcb840bb606424f9f4a299d4f295a8a412e2b25e957474fb8e67d4e2cdf26

Observation 35e1082c-2dfa-42c0-8887-22334b79e57c · outbound

This paper cites SE(3)-Stochastic Flow Matching for Protein Backbone Generation.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation SE(3)-Stochastic Flow Matching for Protein Backbone Generation

Reference 26

Resolution
unresolved
no resolver link, observed 2026-08-12T12:56:55.121092Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T12:56:55.121092Z digest=sha256:e4620d6457cf55351d3510a8c0c3aea2e9de20e6b6ed19c3d597dedc38d383d9

Observation 5c44a02f-f0d8-4778-9b50-8e79d5b9f5f7 · outbound

This paper cites Categorical Flow Matching on Statistical Manifolds, May 2024.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation Categorical Flow Matching on Statistical Manifolds, May 2024

Reference 27

Resolution
unresolved
no resolver link, observed 2026-08-12T12:56:55.154464Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T12:56:55.154464Z digest=sha256:dd63916b58cc44a6e1bf481d36c02a75e33b60ba1f51eb273c57faf922aef2fb

Observation 1e8454f0-a524-4e48-8e7a-30966cd00be8 · outbound

This paper cites Sequence-Augmented SE(3)-Flow Matching For Conditional Protein Backbone Generation.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation Sequence-Augmented SE(3)-Flow Matching For Conditional Protein Backbone Generation

Reference 28

Resolution
unresolved
no resolver link, observed 2026-08-12T12:56:55.130450Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T12:56:55.130450Z digest=sha256:ca682f87e5fb61cdc25e83a4d0f02c0d6e9236be39e0b62ecd1563826f2471c9

Observation 7b27096f-3d1b-4d7f-a04a-39d8d9e3ff79 · outbound

This paper cites Generative Flows on Discrete State-Spaces: Enabling Multimodal Flows with Applications to Protein Co-Design.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation Generative Flows on Discrete State-Spaces: Enabling Multimodal Flows with Applications to Protein Co-Design

Reference 29

Resolution
unresolved
no resolver link, observed 2026-08-12T12:56:55.163980Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T12:56:55.163980Z digest=sha256:6e855b4b31585c2548927c682db422ca535dd57841852a0922dd6751fb2205a0

Observation 91bccffc-12e7-49c6-b42c-bec64417f2bd · outbound

This paper cites Discrete Flow Matching.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation Discrete Flow Matching

Reference 30

Resolution
unresolved
no resolver link, observed 2026-08-12T12:56:55.169338Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T12:56:55.169338Z digest=sha256:0535935978d7ae90af61306f7c775eb185ea7f808eebeab1828abed63c5ab5e1

Observation 06062279-584e-43fc-9d76-46fdf8936fa9 · outbound

This paper cites Fisher Flow Matching for Generative Modeling over Discrete Data.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation Fisher Flow Matching for Generative Modeling over Discrete Data

Reference 31

Resolution
unresolved
no resolver link, observed 2026-08-12T12:56:55.144792Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T12:56:55.144792Z digest=sha256:60643c84e3d069a913bbd5c23c4f1fb3b360250b9cc3554d29996b9121c3c741

Observation d9d12940-799b-4cc0-87fa-6c852d2f2504 · outbound

This paper cites Dirichlet Flow Matching with Applications to DNA Sequence Design.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation Dirichlet Flow Matching with Applications to DNA Sequence Design

Reference 32

Resolution
unresolved
no resolver link, observed 2026-08-12T12:56:55.149553Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T12:56:55.149553Z digest=sha256:353b01aaffe0e2d056fee922ae7ac657e7eff2a78769add140a994bbd59f4bbd

Observation 3e6a5695-34ac-45ce-8ae5-05259f57d8d6 · outbound

This paper cites GEOM, energy-annotated molecular confor- mations for property prediction and molecular generation.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation GEOM, energy-annotated molecular confor- mations for property prediction and molecular generation

Reference 33

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T12:56:56.146776Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.

source=pdf_text observed=2026-08-12T12:56:55.187521Z digest=sha256:10604f621b040e763754b21f6277bb0f42027f2e254fc5e481db2333493fe2af

Observation 611de38a-7e83-43a3-9568-163f764fe82d · outbound

This paper cites Variational Flow Matching for Graph Generation.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation Variational Flow Matching for Graph Generation

Reference 34

Resolution
unresolved
no resolver link, observed 2026-08-12T12:56:55.159013Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T12:56:55.159013Z digest=sha256:07feda8ba1927409b85bc9bd51d11a686eba3beae01704225762f234feaeee07

Observation c225df5d-c3a2-475a-b000-1a155a33b185 · outbound

This paper cites Blum, and Jean-Louis Reymond.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation Blum, and Jean-Louis Reymond

Reference 35

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T12:56:56.132816Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.

source=pdf_text observed=2026-08-12T12:56:55.200798Z digest=sha256:b2260e04149bc920f56d8c9164c41a6825fac41a897ace116e44d4716c6dd26f

Observation 77e5965d-9051-447b-927d-d032bbaf9f1a · outbound

This paper cites Dral, Matthias Rupp, and O.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation Dral, Matthias Rupp, and O

Reference 36

Resolution
unresolved
no resolver link, observed 2026-08-12T12:56:55.209768Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T12:56:55.209768Z digest=sha256:3240eeccbb2ec0775e1aef0a033fc828fb96a4b339375cb74d4778cd73b48a62

Observation a8e04245-6ad7-44b3-9fcc-c32a66cee807 · outbound

This paper cites Equivariant Flow Matching with Hybrid Probability Transport, December.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation Equivariant Flow Matching with Hybrid Probability Transport, December

Reference 37

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T12:56:56.160465Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.

source=pdf_text observed=2026-08-12T12:56:55.174066Z digest=sha256:b21a806f131832eafb4e219b06d839236cf1186d6c2c69f5db8610962c611fbe

Observation e2c7f540-1984-4475-b768-df520dae5552 · outbound

This paper cites Equivariant Flow Matching with Hybrid Probability Transport.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation Equivariant Flow Matching with Hybrid Probability Transport

Reference 38

Resolution
unresolved
no resolver link, observed 2026-08-12T12:56:55.178545Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T12:56:55.178545Z digest=sha256:66b4ca0013d360ed0cabb6a2d6b8d074a3ebfd2cf0cc805d4582f4e9b77ec34b

Observation 28d495ab-3f2e-46e7-b43b-08b4879d137a · outbound

This paper cites Equivariant Graph Neural Networks for 3D Macromolecular Structure.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation Equivariant Graph Neural Networks for 3D Macromolecular Structure

Reference 39

Resolution
unresolved
no resolver link, observed 2026-08-12T12:56:55.183100Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T12:56:55.183100Z digest=sha256:69643f0e39bdce53e2025bec337a54bacad01c8dd7b2fa8aa248fc9e47c098c8

Observation 5df989e8-8399-46b7-8dca-a9acf1c17bc6 · outbound

This paper cites Strategic Pooling of Compounds for High-Throughput Screening.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation Strategic Pooling of Compounds for High-Throughput Screening

Reference 40

Resolution
verified exact
doi, observed 2026-08-12T12:56:55.312495Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.

source=pdf_text observed=2026-08-12T12:56:55.227287Z digest=sha256:6518951dadb9553937652f3a201762b580aacfe0ad8242cedeedab87acbd797c

Observation 6a8e9f65-f5a0-4325-b7b8-79387ab98b24 · outbound

This paper cites The ChEMBL Database in 2023: a drug discovery platform spanning multiple bioactivity data types and time periods.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation The ChEMBL Database in 2023: a drug discovery platform spanning multiple bioactivity data types and time periods

Reference 41

Resolution
unresolved
no resolver link, observed 2026-08-12T12:56:55.231477Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T12:56:55.231477Z digest=sha256:a42d76395fb14c2c3b89352eb9e85063fb80a18dff31c56a578d4ff75c69f148

Observation f3578eb6-5164-4c13-a9d9-86ed09fc0ab4 · outbound

This paper cites MiDi: Mixed Graph and 3D Denoising Diffusion for Molecule Generation.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation MiDi: Mixed Graph and 3D Denoising Diffusion for Molecule Generation

Reference 42

Resolution
unresolved
no resolver link, observed 2026-08-12T12:56:55.196387Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T12:56:55.196387Z digest=sha256:fa5927bdb2cb51c158056ce6bd06850507d6dcc301901dc01cf4d7f011e3bd1f

Observation c3d9daaa-a0ed-4f2a-a140-a40d13992048 · outbound

This paper cites Learning Joint 2D & 3D Diffusion Models for Complete Molecule Generation.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation Learning Joint 2D & 3D Diffusion Models for Complete Molecule Generation

Reference 43

Resolution
unresolved
no resolver link, observed 2026-08-12T12:56:55.240514Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T12:56:55.240514Z digest=sha256:1984a6a6dcd6b1a5d6be149af2766c62d6ac2c293e2a12777b06ae25586f7027

Observation 73cea12e-e6e9-459b-be15-d5704c75ad42 · outbound

This paper cites Navigating the Design Space of Equivariant Diffusion-Based Generative Models for De Novo 3D Molecule Generation.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation Navigating the Design Space of Equivariant Diffusion-Based Generative Models for De Novo 3D Molecule Generation

Reference 44

Resolution
unresolved
no resolver link, observed 2026-08-12T12:56:55.245100Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T12:56:55.245100Z digest=sha256:932f4fe9595a5730e86e4ce2dfe26362ac96a4f1f2ae3f6343b8a5fd14387149

Observation 551cb8f6-7791-4b14-9f1f-742a8b1dfd9d · outbound

This paper cites SemlaFlow -- Efficient 3D Molecular Generation with Latent Attention and Equivariant Flow Matching.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation SemlaFlow -- Efficient 3D Molecular Generation with Latent Attention and Equivariant Flow Matching

Reference 45

Resolution
unresolved
no resolver link, observed 2026-08-12T12:56:55.249551Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T12:56:55.249551Z digest=sha256:26b568846e8f9d190748b1fe831e81f1299dd14adc450ed8871e9e04a9cc234c

Observation 7ea27bca-8bfa-440c-94c3-6dc4441922c3 · outbound

This paper cites URL http://www.rdkit.org/.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation URL http://www.rdkit.org/

Reference 46

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T12:56:56.118692Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.

source=pdf_text observed=2026-08-12T12:56:55.214185Z digest=sha256:dc2821457dd106a80fbd53c8c5c7122e983134e0183e91d1516756ab812354de

Observation c68f54c1-73df-41ff-a5b5-5c3e03a77784 · outbound

This paper cites an unresolved cited work.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation Unresolved cited work

Reference 47

Resolution
unresolved
raw_fallback, observed 2026-08-12T12:56:56.104187Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.

source=pdf_text observed=2026-08-12T12:56:55.218560Z digest=sha256:740c472ff711cb0b393d0db790f07fc35738f4c401399ce5ce03906e26a4050c

Observation ebc30b52-aa17-430e-85c3-c1ff7bf91487 · outbound

This paper cites Lessons Learnt from Assembling Screening Libraries for Drug Dis- covery for Neglected Diseases.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation Lessons Learnt from Assembling Screening Libraries for Drug Dis- covery for Neglected Diseases

Reference 48

Resolution
unresolved
no resolver link, observed 2026-08-12T12:56:55.222773Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T12:56:55.222773Z digest=sha256:a88d0123b4f7d6de3f18a7f76a031af1fd92df878023cc20360f5fbb08faa586

Observation 21e4100b-30f6-4c95-846f-21f9d9dee1a5 · outbound

This paper cites PatWalters/useful_rdkit_utils, September 2024.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation PatWalters/useful_rdkit_utils, September 2024

Reference 51

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T12:56:56.080373Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.

source=pdf_text observed=2026-08-12T12:56:55.236067Z digest=sha256:51a457bbbb7132f9828ed48a6a614f230236703b1f4820828524ff3b8adf233b

Observation 18f75124-7e4b-4cc1-8e7c-f4424771370f · outbound

This paper cites Equivariant flow matching.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation Equivariant flow matching

Reference 55

Resolution
verified exact
local_arxiv, observed 2026-08-12T12:56:55.420546Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.

source=pdf_text observed=2026-08-12T12:56:55.254002Z digest=sha256:813a035b4ed93e0b88f98545a4497bc1c9b0f67624cc8a9fdf8a164dec1ff793

Observation 6debe6f6-49c1-489f-854a-51d403ffdf23 · outbound

This paper cites Deep Graph Library: A Graph-Centric, Highly-Performant Package for Graph Neural Networks.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation Deep Graph Library: A Graph-Centric, Highly-Performant Package for Graph Neural Networks

Reference 56

Resolution
unresolved
no resolver link, observed 2026-08-12T12:56:55.258677Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T12:56:55.258677Z digest=sha256:f4bc305c4565c8b64d17002d2dfcb0b532073e92c91ebf875234b9056fe00a87

Observation 7638de15-3788-429a-9aa8-9b1f3ab460f7 · outbound

This paper cites The data distribution are one-hot vectors indicating the type of each atom.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation The data distribution are one-hot vectors indicating the type of each atom

Reference 57

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T12:56:56.066383Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.

source=pdf_text observed=2026-08-12T12:56:55.263817Z digest=sha256:1c716d569581809422acc5919182730f15c24759d8cab953be221f008758c8e2

Observation d90b9bf4-1c92-4432-a7f3-2b99cd6e9ef2 · outbound

This paper cites marginal-simplex.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation marginal-simplex

Reference 58

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T12:56:56.051544Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.

source=pdf_text observed=2026-08-12T12:56:55.268186Z digest=sha256:a75a6961d1c116ddb14c5d20ae8e83ffe025c066942d0188b43463c1def2d570

Observation 190c91f8-60e3-4c4b-8f31-b2f1717d84dd · outbound

This paper cites an unresolved cited work.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation Unresolved cited work

Reference 59

Resolution
unresolved
raw_fallback, observed 2026-08-12T12:56:56.037168Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.

source=pdf_text observed=2026-08-12T12:56:55.273074Z digest=sha256:1edbeaa4d87431a44e32aa783663659f769fdda4c19d7e354da712bbd9163231

Observation f1bfe641-4ef2-4a8d-a61e-ce3b1e1218c2 · outbound

This paper cites Denoising Diffusion Probabilistic Models.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation Denoising Diffusion Probabilistic Models

Reference 2020

Resolution
unresolved
no resolver link, observed 2026-08-12T12:56:55.083642Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T12:56:55.083642Z digest=sha256:14235ca32c58a5343ecc76d3d91022a81c620c14a3fd1e2c057110204057d0b4

Observation e68ef5a8-6091-4d54-a41c-529e8011dc58 · outbound

This paper cites doi: 10.1038/s41597-022-01288-4.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation doi: 10.1038/s41597-022-01288-4

Reference 2022

Resolution
unresolved
no resolver link, observed 2026-08-12T12:56:55.191856Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T12:56:55.191856Z digest=sha256:d13365200538dae0682cc9d31a8d5b74e3f67753ad648d62293a321ab9126f2f

Observation 989a1fcd-0c9e-4d3e-acf4-bee6c58957f5 · outbound

This paper cites 3D Equivariant Diffusion for Target-Aware Molecule Generation and Affinity Prediction.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation 3D Equivariant Diffusion for Target-Aware Molecule Generation and Affinity Prediction

Reference 2023

Resolution
unresolved
no resolver link, observed 2026-08-12T12:56:55.011720Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T12:56:55.011720Z digest=sha256:82bfd1c411e5ef808278bf4993a5ddbb3d108b2010adf84065daacb9c4c43efa

Observation 995f14a1-f1b0-4140-b6e4-7303d4a4540a · outbound

This paper cites doi: 10.1038/s42256-024-00815-9.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation doi: 10.1038/s42256-024-00815-9

Reference 2024

Resolution
unresolved
no resolver link, observed 2026-08-12T12:56:55.041887Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T12:56:55.041887Z digest=sha256:cc212e736892022ee1c51c0a4c1163860cf40c7a8a7e43e9b0590cfaf3f2fd39

Observation 141da5b6-56d5-48ad-ab1f-f449f7152a22 · outbound

This paper cites URL https://doi.org/10.1021/ci300415d.

Exploring Discrete Flow Matching for 3D De Novo Molecule Generation URL https://doi.org/10.1021/ci300415d

Reference 9596

Resolution
unresolved
no resolver link, observed 2026-08-12T12:56:55.205269Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T12:56:55.205269Z digest=sha256:83ea49607e80cc3137d9be1f62e00023d5fd52df4a1e175c88e08c21a05f4e26

Pith citing papers

Observation b0e03608-80c3-44ba-9bb1-f2f3017e83ff · inbound

ShallowBench: Benchmarking Generative Drug Design Models on Shallow-Pocket Targets cites this paper.

ShallowBench: Benchmarking Generative Drug Design Models on Shallow-Pocket Targets Exploring Discrete Flow Matching for 3D De Novo Molecule Generation

Reference 12

Resolution
verified exact
arxiv_id, observed 2026-06-28T02:31:30.234991Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-12T06:34:41.77262+00:00.

source=arxiv_source observed=2026-06-28T02:21:39.968543Z digest=sha256:cb4dc2c2cff45d33f39ce629b34226968190d0bc5a3943dda9dabc6736ef2a9b

Observation 67931cb6-b43b-47cc-b281-71663010114f · inbound

Boltzmann-Expected Molecular Design with Decoupled Annealing Flows cites this paper.

Boltzmann-Expected Molecular Design with Decoupled Annealing Flows Exploring Discrete Flow Matching for 3D De Novo Molecule Generation

Reference 72

Resolution
unresolved
no resolver link, observed 2026-08-01T12:34:59.774345Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-01T12:34:59.774345Z digest=sha256:82e9a678b2594d80fc601f48930a2f5a0a3701deaa93bfeb57c1cd271ad846ef