Paper Citation Record · LEDGER

CellFlux: Simulating Cellular Morphology Changes via Flow Matching

As of 9 August 2026, this Paper Citation Record lists 37 of 37 outbound references and 8 inbound Pith citation observations for arXiv:2502.09775.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2502.09775 v3

Coverage vector

measured 37 of 37 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-07T20:40:31.727295Z

measured 45 of 45 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-09T06:31:02.800959+00:00

measured 8 of 8 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-06-29T05:11:09.189141Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: arxiv_reference, observed 2026-07-03T04:17:37.245830Z

Reference resolution

37 of 37 outbound references displayed

verified exact0
verified fuzzy25
unresolved12
parse uncertain0
malformed identifier0
metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation b9e0121a-0744-42ee-ae76-25e751f8e4f2 · outbound

This paper cites write newline.

CellFlux: Simulating Cellular Morphology Changes via Flow Matching write newline

Reference 1

Resolution: unresolved; no resolver link, observed 2026-08-07T20:40:31.566665Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation a0bcf155-11ce-4bdf-800f-f8231cca4c28 · outbound

This paper cites Phendiff: Revealing subtle phenotypes with diffusion models in real images.

CellFlux: Simulating Cellular Morphology Changes via Flow Matching Phendiff: Revealing subtle phenotypes with diffusion models in real images

Reference 2

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T20:40:32.231201Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 23149883-e733-41d3-8f6a-b7572e50e2d4 · outbound

This paper cites B., et al.

CellFlux: Simulating Cellular Morphology Changes via Flow Matching B., et al

Reference 3

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T20:40:32.215416Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 18719e45-1297-442a-998d-d406e0ab6996 · outbound

This paper cites D., Walls, R.

CellFlux: Simulating Cellular Morphology Changes via Flow Matching D., Walls, R

Reference 4

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T20:40:32.200973Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 417129e0-98bb-4291-bceb-0420e05005b1 · outbound

This paper cites an unresolved cited work.

CellFlux: Simulating Cellular Morphology Changes via Flow Matching Unresolved cited work

Reference 5

Resolution: unresolved; raw_fallback, observed 2026-08-07T20:40:32.187147Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 7fb6d2a2-6e16-4f59-b255-b73b085f1512 · outbound

This paper cites N., Ackerman, J., Alix, E., Ando, D.

CellFlux: Simulating Cellular Morphology Changes via Flow Matching N., Ackerman, J., Alix, E., Ando, D

Reference 6

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T20:40:32.172961Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 173d32d2-cfbc-47d5-8377-75d3cdfc82a3 · outbound

This paper cites J., Skewes-Cox, P., and Godinez, W.

CellFlux: Simulating Cellular Morphology Changes via Flow Matching J., Skewes-Cox, P., and Godinez, W

Reference 7

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T20:40:32.158802Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 098c8697-1b75-4ae2-b518-7f20edb14bdb · outbound

This paper cites Scaling rectified flow transformers for high-resolution image synthesis.

CellFlux: Simulating Cellular Morphology Changes via Flow Matching Scaling rectified flow transformers for high-resolution image synthesis

Reference 8

Resolution: unresolved; no resolver link, observed 2026-08-07T20:40:31.599728Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 4fecb941-d804-4201-b519-b123e19829aa · outbound

This paper cites M., Kraus, O., Victors, M., Arumugam, L., Vuggumudi, K., Urbanik, J., Hansen, K., Celik, S., Cernek, N., Jagannathan, G., et al.

CellFlux: Simulating Cellular Morphology Changes via Flow Matching M., Kraus, O., Victors, M., Arumugam, L., Vuggumudi, K., Urbanik, J., Hansen, K., Celik, S., Cernek, N., Jagannathan, G., et al

Reference 9

Resolution: unresolved; no resolver link, observed 2026-08-07T20:40:31.604162Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation f3f3c3fe-fefd-4fd4-8182-029940f2c6c3 · outbound

This paper cites Generative adversarial nets.

CellFlux: Simulating Cellular Morphology Changes via Flow Matching Generative adversarial nets

Reference 10

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T20:40:32.127869Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation a0f66504-a7d8-494b-82ff-6b2d07b9ea26 · outbound

This paper cites J., Oktay, D., Lin, Z., Verkuil, R., Tran, V.

CellFlux: Simulating Cellular Morphology Changes via Flow Matching J., Oktay, D., Lin, Z., Verkuil, R., Tran, V

Reference 11

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T20:40:32.113980Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 80ba3ffe-add4-4ef2-8096-05958fcb1241 · outbound

This paper cites Classifier-Free Diffusion Guidance.

CellFlux: Simulating Cellular Morphology Changes via Flow Matching Classifier-Free Diffusion Guidance

Reference 12

Resolution: unresolved; no resolver link, observed 2026-08-07T20:40:31.616781Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 1d45b0d8-05dc-4fbc-a96f-baab99c15a45 · outbound

This paper cites Denoising diffusion probabilistic models.

CellFlux: Simulating Cellular Morphology Changes via Flow Matching Denoising diffusion probabilistic models

Reference 13

Resolution: unresolved; no resolver link, observed 2026-08-07T20:40:31.621359Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 0b8d6868-de01-4c6c-a96d-f271aa49e5be · outbound

This paper cites Z., Zhang, C.

CellFlux: Simulating Cellular Morphology Changes via Flow Matching Z., Zhang, C

Reference 14

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T20:40:32.090019Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation efcc32d8-02e0-46fa-b43b-f6850110b3c8 · outbound

This paper cites T., Agmon, E., Akamatsu, M., Lundberg, E., Lyons, B., Ouyang, W., Quintero-Carmona, O.

CellFlux: Simulating Cellular Morphology Changes via Flow Matching T., Agmon, E., Akamatsu, M., Lundberg, E., Lyons, B., Ouyang, W., Quintero-Carmona, O

Reference 15

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T20:40:32.076498Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 09fe3aa8-a754-4cb0-bc60-24bb3d984101 · outbound

This paper cites Digital twins for health: a scoping review.

CellFlux: Simulating Cellular Morphology Changes via Flow Matching Digital twins for health: a scoping review

Reference 16

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T20:40:32.062588Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 3c4a4929-a759-4d69-ba7f-20063f983a45 · outbound

This paper cites V., Gupta, A., Hahn, M., Hauth, A., Hendon, D., Martinez, A., Minnen, D., Sirotenko, M., Sohn, K., Yang, X., Adam, H., Yang, M.-H., Essa, I., Wang, H., Ross, D.

CellFlux: Simulating Cellular Morphology Changes via Flow Matching V., Gupta, A., Hahn, M., Hauth, A., Hendon, D., Martinez, A., Minnen, D., Sirotenko, M., Sohn, K., Yang, X., Adam, H., Yang, M.-H., Essa, I., Wang, H., Ross, D

Reference 17

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T20:40:32.049229Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 336c9117-cd13-43f7-baf4-7e0b36de525c · outbound

This paper cites Revealing invisible cell phenotypes with conditional generative modeling.

CellFlux: Simulating Cellular Morphology Changes via Flow Matching Revealing invisible cell phenotypes with conditional generative modeling

Reference 18

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T20:40:32.035753Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation a8326a45-8320-4d98-878b-824f22c8793f · outbound

This paper cites T., Ben-Hamu, H., Nickel, M., and Le, M.

CellFlux: Simulating Cellular Morphology Changes via Flow Matching T., Ben-Hamu, H., Nickel, M., and Le, M

Reference 19

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T20:40:32.021892Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 9e2aca31-dcb3-47f2-bfb9-c684fd0d63f7 · outbound

This paper cites Flow Matching Guide and Code.

CellFlux: Simulating Cellular Morphology Changes via Flow Matching Flow Matching Guide and Code

Reference 20

Resolution: unresolved; no resolver link, observed 2026-08-07T20:40:31.651285Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 141762af-5843-40db-b580-5ceca126fcb2 · outbound

This paper cites Flowing from Words to Pixels: A Noise-Free Framework for Cross-Modality Evolution.

CellFlux: Simulating Cellular Morphology Changes via Flow Matching Flowing from Words to Pixels: A Noise-Free Framework for Cross-Modality Evolution

Reference 21

Resolution: unresolved; no resolver link, observed 2026-08-07T20:40:31.655763Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 7602288e-6125-46a2-af78-31ff64e320db · outbound

This paper cites Flow straight and fast: Learning to generate and transfer data with rectified flow.

CellFlux: Simulating Cellular Morphology Changes via Flow Matching Flow straight and fast: Learning to generate and transfer data with rectified flow

Reference 22

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T20:40:32.008108Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 0e568cf4-28e0-4944-873c-fce9feb8249a · outbound

This paper cites L., and Carpenter, A.

CellFlux: Simulating Cellular Morphology Changes via Flow Matching L., and Carpenter, A

Reference 23

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T20:40:31.993833Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 4d55a1d7-ee1a-4737-9df6-a024868c8f85 · outbound

This paper cites F., and Altschuler, S.

CellFlux: Simulating Cellular Morphology Changes via Flow Matching F., and Altschuler, S

Reference 24

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T20:40:31.980016Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation a6fa8ee8-eee0-4b1b-b410-8b21512ab0f8 · outbound

This paper cites A., Liu, L., Carpenter, A.

CellFlux: Simulating Cellular Morphology Changes via Flow Matching A., Liu, L., Carpenter, A

Reference 25

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T20:40:31.965355Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation d8034233-49a3-4bee-b265-45be2ceac251 · outbound

This paper cites GPT-4 Technical Report.

CellFlux: Simulating Cellular Morphology Changes via Flow Matching GPT-4 Technical Report

Reference 26

Resolution: unresolved; no resolver link, observed 2026-08-07T20:40:31.677242Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation dbcf65ed-1d7a-4a59-9f22-b6ddd844ea81 · outbound

This paper cites J., and Lotfollahi, M.

CellFlux: Simulating Cellular Morphology Changes via Flow Matching J., and Lotfollahi, M

Reference 27

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T20:40:31.949345Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 807c437f-f2a9-46ec-ae29-35f5204f6621 · outbound

This paper cites J., Mohamed, S., and Lakshminarayanan, B.

CellFlux: Simulating Cellular Morphology Changes via Flow Matching J., Mohamed, S., and Lakshminarayanan, B

Reference 28

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T20:40:31.935124Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation c5ee471c-3eb0-4b98-80b3-061386c6c6a1 · outbound

This paper cites E., Slack, M.

CellFlux: Simulating Cellular Morphology Changes via Flow Matching E., Slack, M

Reference 29

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T20:40:31.921082Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation ee2aeb50-65bf-47cd-9269-53974db0103c · outbound

This paper cites U-net: Convolutional networks for biomedical image segmentation.

CellFlux: Simulating Cellular Morphology Changes via Flow Matching U-net: Convolutional networks for biomedical image segmentation

Reference 30

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T20:40:31.906948Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 2cf90468-9296-48eb-82ad-61c9b4406a58 · outbound

This paper cites M., Schaff, J.

CellFlux: Simulating Cellular Morphology Changes via Flow Matching M., Schaff, J

Reference 31

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T20:40:31.892884Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation daf8e590-6fc1-456b-9c51-679d66f29665 · outbound

This paper cites Deep unsupervised learning using nonequilibrium thermodynamics.

CellFlux: Simulating Cellular Morphology Changes via Flow Matching Deep unsupervised learning using nonequilibrium thermodynamics

Reference 32

Resolution: unresolved; no resolver link, observed 2026-08-07T20:40:31.702529Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation e5c688ba-1da0-4e4e-806d-c7538dda35f6 · outbound

This paper cites and Ermon, S.

CellFlux: Simulating Cellular Morphology Changes via Flow Matching and Ermon, S

Reference 33

Resolution: unresolved; no resolver link, observed 2026-08-07T20:40:31.710153Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 0c23684c-6c3d-4bca-80f6-b0d3549dc8b3 · outbound

This paper cites R., et al.

CellFlux: Simulating Cellular Morphology Changes via Flow Matching R., et al

Reference 34

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T20:40:31.861565Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 8c0475d4-f3f6-461b-86e0-14d594e53aeb · outbound

This paper cites Pixel recurrent neural networks.

CellFlux: Simulating Cellular Morphology Changes via Flow Matching Pixel recurrent neural networks

Reference 35

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T20:40:31.847583Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 99acb121-3339-4387-a8cf-b9ce02975527 · outbound

This paper cites X., Barzilay, R., Jaakkola, T., and Uhler, C.

CellFlux: Simulating Cellular Morphology Changes via Flow Matching X., Barzilay, R., Jaakkola, T., and Uhler, C

Reference 36

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T20:40:31.832371Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation c3b744b1-2de3-41fa-bc54-c88d9aea4df8 · outbound

This paper cites Guided Flows for Generative Modeling and Decision Making.

CellFlux: Simulating Cellular Morphology Changes via Flow Matching Guided Flows for Generative Modeling and Decision Making

Reference 37

Resolution: unresolved; no resolver link, observed 2026-08-07T20:40:31.727295Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Pith citing papers

Observation b8585a51-336c-4002-9c88-966dc9b4f9d9 · inbound

ContextFlow: Context-Aware Flow Matching For Trajectory Inference From Spatial Omics Data cites this paper.

ContextFlow: Context-Aware Flow Matching For Trajectory Inference From Spatial Omics Data CellFlux: Simulating Cellular Morphology Changes via Flow Matching

Reference 8

Resolution: verified exact; arxiv_id, observed 2026-05-18T10:11:13.893078Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 784c037a-c846-4de4-a2c6-ff5e94b448bc · inbound

Uncertainty-Aware Distribution-to-Distribution Flow Matching for Scientific Imaging cites this paper.

Uncertainty-Aware Distribution-to-Distribution Flow Matching for Scientific Imaging CellFlux: Simulating Cellular Morphology Changes via Flow Matching

Reference 52

Resolution: verified exact; arxiv_id, observed 2026-05-15T01:13:26.226247Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 53a7edd9-77d7-4259-9b53-202fffa7e3a4 · inbound

Uncertainty-Aware Distribution-to-Distribution Flow Matching for Scientific Imaging cites this paper.

Uncertainty-Aware Distribution-to-Distribution Flow Matching for Scientific Imaging CellFlux: Simulating Cellular Morphology Changes via Flow Matching

Reference 52

Resolution: verified exact; arxiv_id, observed 2026-05-22T10:51:26.730241Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 4df9d847-9589-4d3d-a1bd-ed726adc092a · inbound

CellFluxRL: Biologically-Constrained Virtual Cell Modeling via Reinforcement Learning cites this paper.

CellFluxRL: Biologically-Constrained Virtual Cell Modeling via Reinforcement Learning CellFlux: Simulating Cellular Morphology Changes via Flow Matching

Reference 48

Resolution: verified exact; arxiv_id, observed 2026-05-15T01:08:25.857210Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 707328c1-2ae6-4a99-a80f-2fa063e25080 · inbound

CellFluxRL: Biologically-Constrained Virtual Cell Modeling via Reinforcement Learning cites this paper.

CellFluxRL: Biologically-Constrained Virtual Cell Modeling via Reinforcement Learning CellFlux: Simulating Cellular Morphology Changes via Flow Matching

Reference 48

Resolution: verified exact; arxiv_id, observed 2026-05-22T10:44:47.570411Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 8e627f79-f621-4bb3-a0bd-d433b3b8b9e0 · inbound

Intervention-Aware Multiscale Representation Learning from Imaging Phenomics and Perturbation Transcriptomics cites this paper.

Intervention-Aware Multiscale Representation Learning from Imaging Phenomics and Perturbation Transcriptomics CellFlux: Simulating Cellular Morphology Changes via Flow Matching

Reference 33

Resolution: verified exact; arxiv_id, observed 2026-05-10T05:51:10.115738Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 755a9f7e-1a56-449a-8432-3a8558fefea6 · inbound

FreeBridge: Variational Schr\"odinger Bridges for Cellular Transition Dynamics cites this paper.

FreeBridge: Variational Schr\"odinger Bridges for Cellular Transition Dynamics CellFlux: Simulating Cellular Morphology Changes via Flow Matching

Reference 25

Resolution: metadata mismatch; arxiv_id, observed 2026-07-03T04:17:37.247292Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation e1afb323-d610-489e-9014-73905735adb2 · inbound

PerturbCellRL: Verifier-Guided Reinforcement Learning for Single-Cell Perturbation Prediction cites this paper.

PerturbCellRL: Verifier-Guided Reinforcement Learning for Single-Cell Perturbation Prediction CellFlux: Simulating Cellular Morphology Changes via Flow Matching

Reference 33

Resolution: verified exact; arxiv_id, observed 2026-06-29T18:13:49.475461Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.