Paper Citation Record · LEDGER

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search

As of 10 August 2026, this Paper Citation Record lists 50 of 50 outbound references and 3 inbound Pith citation observations for arXiv:2506.00925.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2506.00925 v1

Coverage vector

measured 50 of 50 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-07T11:58:52.471129Z

measured 53 of 53 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-10T06:31:04.303077+00:00

measured 3 of 3 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-08-03T16:07:37.554602Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: arxiv_reference, observed 2026-05-25T02:46:33.473498Z

Reference resolution

50 of 50 outbound references displayed

verified exact2
verified fuzzy22
unresolved26
parse uncertain0
malformed identifier0
metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 1302ae26-3727-48f2-aad1-5dd474ff0034 · outbound

This paper cites Accurate structure prediction of biomolecular interactions with alphafold 3.Nature, pages 1–3, 2024.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search Accurate structure prediction of biomolecular interactions with alphafold 3.Nature, pages 1–3, 2024

Reference 1

Resolution: unresolved; no resolver link, observed 2026-08-07T11:58:46.571281Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation a37fd9b8-2708-4ab2-a3ba-12b7f6052259 · outbound

This paper cites Accurate prediction of protein structures and interactions using a three-track neural network.Science, 373(6557):871–876, 2021.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search Accurate prediction of protein structures and interactions using a three-track neural network.Science, 373(6557):871–876, 2021

Reference 2

Resolution: unresolved; no resolver link, observed 2026-08-07T11:58:46.670877Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 417c4fb2-705e-4363-a4b4-7f3569c8f6da · outbound

This paper cites Large Language Monkeys: Scaling Inference Compute with Repeated Sampling.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search Large Language Monkeys: Scaling Inference Compute with Repeated Sampling

Reference 3

Resolution: unresolved; no resolver link, observed 2026-08-07T11:58:46.790059Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation c3d97612-6c91-4c15-9973-0149fd086001 · outbound

This paper cites Protein design: a hierarchic approach.Science, 270(5238):935– 941, 1995.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search Protein design: a hierarchic approach.Science, 270(5238):935– 941, 1995

Reference 4

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T11:58:58.822372Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

Observation 7514acf6-9110-4fcb-9d7c-dd79ff7f85dc · outbound

This paper cites How root-mean-square distance (rmsd) values depend on the resolution of protein structures that are compared.Applied Crystallography, 36(1):125–128, 2003.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search How root-mean-square distance (rmsd) values depend on the resolution of protein structures that are compared.Applied Crystallography, 36(1):125–128, 2003

Reference 5

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T11:58:58.536419Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

Observation 1b05fd21-2627-4ba8-b97b-20e7fc09effc · outbound

This paper cites Sparks of function by de novo protein design.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search Sparks of function by de novo protein design

Reference 6

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T11:58:58.306298Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

Observation 414e764d-3fb7-4d28-a1cd-99f45453eb76 · outbound

This paper cites Efficient selectivity and backup operators in monte-carlo tree search.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search Efficient selectivity and backup operators in monte-carlo tree search

Reference 7

Resolution: unresolved; no resolver link, observed 2026-08-07T11:58:47.257139Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 7f5bab0f-311b-47e5-a84c-e6d8b24d6464 · outbound

This paper cites Robust deep learning–based protein sequence design using proteinmpnn.Science, 378(6615):49–56, 2022.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search Robust deep learning–based protein sequence design using proteinmpnn.Science, 378(6615):49–56, 2022

Reference 8

Resolution: unresolved; no resolver link, observed 2026-08-07T11:58:47.380243Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation bbb73966-c1c0-49ab-be82-8a72015e34b0 · outbound

This paper cites an unresolved cited work.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search Unresolved cited work

Reference 9

Resolution: unresolved; no resolver link, observed 2026-08-07T11:58:47.513458Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 01f0ae8f-a50f-4743-94c9-baab7721c7cd · outbound

This paper cites AlphaDesign: A graph protein design method and benchmark on AlphaFoldDB.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search AlphaDesign: A graph protein design method and benchmark on AlphaFoldDB

Reference 10

Resolution: unresolved; no resolver link, observed 2026-08-07T11:58:47.622747Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation bb22ab4b-2b4d-479e-915d-63651ce2e707 · outbound

This paper cites an unresolved cited work.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search Unresolved cited work

Reference 11

Resolution: unresolved; raw_fallback, observed 2026-08-07T11:58:58.085436Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

Observation d5f9281c-6a6c-40d4-b4ea-c6b21fd4caa6 · outbound

This paper cites an unresolved cited work.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search Unresolved cited work

Reference 12

Resolution: unresolved; raw_fallback, observed 2026-08-07T11:58:57.846851Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

Observation 5f69b335-9113-43b2-98b3-378cd2243ceb · outbound

This paper cites Uniif: Unified molecule inverse folding.Advances in Neural Information Processing Systems, 37:135843–135860, 2024.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search Uniif: Unified molecule inverse folding.Advances in Neural Information Processing Systems, 37:135843–135860, 2024

Reference 13

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T11:58:57.585725Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

Observation 20c0a082-414f-465c-8a03-d550b4f6f8c2 · outbound

This paper cites Protein remote homology detection and structural alignment using deep learning.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search Protein remote homology detection and structural alignment using deep learning

Reference 14

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T11:58:57.350183Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

Observation bd3b602a-ecb2-45be-9a07-04de584ce4aa · outbound

This paper cites Reasoning with Language Model is Planning with World Model.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search Reasoning with Language Model is Planning with World Model

Reference 15

Resolution: unresolved; no resolver link, observed 2026-08-07T11:58:48.207669Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation dd8443b6-644f-4bb7-9476-ae1c929fe7de · outbound

This paper cites Simulating 500 million years of evolution with a language model.Science, page eads0018, 2025.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search Simulating 500 million years of evolution with a language model.Science, page eads0018, 2025

Reference 16

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T11:58:57.118774Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

Observation b040802e-acca-44dd-8efe-039b5c16b3b8 · outbound

This paper cites Learning inverse folding from millions of predicted structures.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search Learning inverse folding from millions of predicted structures

Reference 17

Resolution: unresolved; no resolver link, observed 2026-08-07T11:58:48.434164Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 32e0a02c-28de-4887-9207-5623bcd2f6bc · outbound

This paper cites The coming of age of de novo protein design.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search The coming of age of de novo protein design

Reference 18

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T11:58:56.875746Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

Observation 99d20e5e-cb6a-46c7-b63a-28a8cfd23ac1 · outbound

This paper cites Generative models for graph-based protein design.Advances in neural information processing systems, 32, 2019.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search Generative models for graph-based protein design.Advances in neural information processing systems, 32, 2019

Reference 19

Resolution: unresolved; no resolver link, observed 2026-08-07T11:58:48.665289Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation c0c85c74-f74d-4008-ab15-ab8ccd039052 · outbound

This paper cites Learning from protein structure with geometric vector perceptrons.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search Learning from protein structure with geometric vector perceptrons

Reference 20

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T11:58:56.633714Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

Observation a05e6b2c-e6dd-4678-8317-159f2d7e0d48 · outbound

This paper cites Learning from protein structure with geometric vector perceptrons.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search Learning from protein structure with geometric vector perceptrons

Reference 21

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T11:58:56.382993Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

Observation 6a7e8a8f-3475-4436-accb-42db00e085bd · outbound

This paper cites Representativeness revisited: Attribute substitution in intuitive judgment.Heuristics and biases: The psychology of intuitive judgment, 49(49-81):74, 2002.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search Representativeness revisited: Attribute substitution in intuitive judgment.Heuristics and biases: The psychology of intuitive judgment, 49(49-81):74, 2002

Reference 22

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T11:58:56.107867Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

Observation 1a48eb8a-51ab-481c-8ba2-ac3329d5edcd · outbound

This paper cites MindStar: Enhancing Math Reasoning in Pre-trained LLMs at Inference Time.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search MindStar: Enhancing Math Reasoning in Pre-trained LLMs at Inference Time

Reference 23

Resolution: unresolved; no resolver link, observed 2026-08-07T11:58:49.175539Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation c9287193-e0f8-4ad0-b65d-3905e0932b44 · outbound

This paper cites A new age in protein design empowered by deep learning.Cell Systems, 14(11):925–939, 2023.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search A new age in protein design empowered by deep learning.Cell Systems, 14(11):925–939, 2023

Reference 24

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T11:58:55.850220Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

Observation b4b2eb6f-e6d7-4a81-9bab-bde07c135257 · outbound

This paper cites Bandit based monte-carlo planning.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search Bandit based monte-carlo planning

Reference 25

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T11:58:55.579818Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

Observation 65d49feb-333f-4fbf-9b3e-f52ec15a0b01 · outbound

This paper cites Language models of protein sequences at the scale of evolution enable accurate structure prediction.BioRxiv, 2022:500902, 2022.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search Language models of protein sequences at the scale of evolution enable accurate structure prediction.BioRxiv, 2022:500902, 2022

Reference 26

Resolution: unresolved; no resolver link, observed 2026-08-07T11:58:49.580827Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 9316f80d-6475-4177-9357-b1543a7f80b2 · outbound

This paper cites De novo protein design using geometric vector field networks.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search De novo protein design using geometric vector field networks

Reference 27

Resolution: unresolved; no resolver link, observed 2026-08-07T11:58:49.690864Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 498af2ba-9aba-45fe-a17a-5d6337e010e3 · outbound

This paper cites Increasing sequence diversity with flexible backbone protein design: the complete redesign of a protein hydrophobic core.Structure, 20(6):1086–1096, 2012.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search Increasing sequence diversity with flexible backbone protein design: the complete redesign of a protein hydrophobic core.Structure, 20(6):1086–1096, 2012

Reference 28

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T11:58:55.340048Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

Observation 9e475445-64ec-4efc-ac7f-75b6c0e3730b · outbound

This paper cites Cath–a hierarchic classification of protein domain structures.Structure, 5(8):1093–1109, 1997.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search Cath–a hierarchic classification of protein domain structures.Structure, 5(8):1093–1109, 1997

Reference 29

Resolution: unresolved; no resolver link, observed 2026-08-07T11:58:49.985237Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 401ebe53-9236-41fc-aa5b-9ba4c81c56e5 · outbound

This paper cites Mutual Reasoning Makes Smaller LLMs Stronger Problem-Solvers.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search Mutual Reasoning Makes Smaller LLMs Stronger Problem-Solvers

Reference 30

Resolution: unresolved; no resolver link, observed 2026-08-07T11:58:50.105199Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation a9efcf04-b352-4baf-ba11-79db557b3964 · outbound

This paper cites Fast uncovering of protein sequence diversity from structure.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search Fast uncovering of protein sequence diversity from structure

Reference 31

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T11:58:55.110643Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

Observation 748f6f3a-e81d-49ee-9384-e59ccee20e61 · outbound

This paper cites Mas- tering the game of go with deep neural networks and tree search.nature, 529(7587):484–489, 2016.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search Mas- tering the game of go with deep neural networks and tree search.nature, 529(7587):484–489, 2016

Reference 32

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T11:58:54.867211Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

Observation bea9356c-acc1-4353-87d3-d9614b53b0fa · outbound

This paper cites The empirical case for two systems of reasoning.Psychological bulletin, 119(1):3, 1996.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search The empirical case for two systems of reasoning.Psychological bulletin, 119(1):3, 1996

Reference 33

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T11:58:54.621083Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

Observation f8992498-a91f-4405-a47e-3fe70058b5ba · outbound

This paper cites Scaling LLM Test-Time Compute Optimally can be More Effective than Scaling Model Parameters.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search Scaling LLM Test-Time Compute Optimally can be More Effective than Scaling Model Parameters

Reference 34

Resolution: unresolved; no resolver link, observed 2026-08-07T11:58:50.550308Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 7726afda-4d45-4668-bd80-49178a49cad6 · outbound

This paper cites Psychology Press, 1999.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search Psychology Press, 1999

Reference 35

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T11:58:54.456254Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

Observation f3bf857b-98fe-4913-8741-1592b15742e4 · outbound

This paper cites Generative De Novo Protein Design with Global Context.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search Generative De Novo Protein Design with Global Context

Reference 36

Resolution: unresolved; no resolver link, observed 2026-08-07T11:58:50.749902Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 8432a0c0-1246-4082-bc1a-da27c0960471 · outbound

This paper cites Global-context aware generative protein design.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search Global-context aware generative protein design

Reference 37

Resolution: unresolved; no resolver link, observed 2026-08-07T11:58:50.896709Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 8a8e96c9-160b-44ce-9825-efd9635dc47b · outbound

This paper cites Q*: Improving multi-step reasoning for llms with deliberative planning, 2024.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search Q*: Improving multi-step reasoning for llms with deliberative planning, 2024

Reference 38

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T11:58:54.196276Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

Observation a4bfbd24-fea7-43cc-b451-e26ab6f9906e · outbound

This paper cites Chi, Sharan Narang, Aakanksha Chowdhery, and Denny Zhou.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search Chi, Sharan Narang, Aakanksha Chowdhery, and Denny Zhou

Reference 39

Resolution: unresolved; no resolver link, observed 2026-08-07T11:58:51.154911Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 255c046e-bcb2-42ac-87cd-9e543717e34c · outbound

This paper cites High-resolution de novo structure prediction from primary sequence.BioRxiv, pages 2022–07, 2022.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search High-resolution de novo structure prediction from primary sequence.BioRxiv, pages 2022–07, 2022

Reference 40

Resolution: unresolved; no resolver link, observed 2026-08-07T11:58:51.277296Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation feb16f13-e5b0-4c5d-83df-09a59c102902 · outbound

This paper cites Inference Scaling Laws: An Empirical Analysis of Compute-Optimal Inference for Problem-Solving with Language Models.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search Inference Scaling Laws: An Empirical Analysis of Compute-Optimal Inference for Problem-Solving with Language Models

Reference 41

Resolution: unresolved; no resolver link, observed 2026-08-07T11:58:51.424723Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 69432565-24bc-43ea-a459-8639dcd96189 · outbound

This paper cites Fast non-autoregressive inverse folding with discrete diffusion.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search Fast non-autoregressive inverse folding with discrete diffusion

Reference 42

Resolution: verified exact; local_arxiv, observed 2026-08-07T11:58:52.907883Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

Observation 103ca4f9-23b4-4079-850e-12cac988171f · outbound

This paper cites Tree of thoughts: Deliberate problem solving with large language models.Ad- vances in Neural Information Processing Systems, 36, 2024.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search Tree of thoughts: Deliberate problem solving with large language models.Ad- vances in Neural Information Processing Systems, 36, 2024

Reference 43

Resolution: unresolved; no resolver link, observed 2026-08-07T11:58:51.713919Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 436c4b7f-34ce-4235-9ebc-7842feaedcdd · outbound

This paper cites Graph denoising diffusion for inverse protein folding.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search Graph denoising diffusion for inverse protein folding

Reference 44

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T11:58:53.920552Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

Observation d8632ed7-de4d-4b98-84c2-57d2a669e2a9 · outbound

This paper cites Inverse protein folding problem: designing polymer sequences.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search Inverse protein folding problem: designing polymer sequences

Reference 45

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T11:58:53.685959Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

Observation 94c2f9b8-4880-4b5e-b3bb-67c0bf3dd9ec · outbound

This paper cites Accessing GPT-4 level Mathematical Olympiad Solutions via Monte Carlo Tree Self-refine with LLaMa-3 8B.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search Accessing GPT-4 level Mathematical Olympiad Solutions via Monte Carlo Tree Self-refine with LLaMa-3 8B

Reference 46

Resolution: unresolved; no resolver link, observed 2026-08-07T11:58:52.056824Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 3914f7a3-cb63-4517-b053-8ec441994e22 · outbound

This paper cites Tm-align: a protein structure alignment algorithm based on the tm-score.Nucleic acids research, 33(7):2302–2309, 2005.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search Tm-align: a protein structure alignment algorithm based on the tm-score.Nucleic acids research, 33(7):2302–2309, 2005

Reference 47

Resolution: unresolved; no resolver link, observed 2026-08-07T11:58:52.150614Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation d27c396e-1bc8-465e-92e4-1598e99c74de · outbound

This paper cites Structure- informed language models are protein designers.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search Structure- informed language models are protein designers

Reference 48

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T11:58:53.518112Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

Observation b902b7b5-5884-4e40-93fb-fd728ccaa1f3 · outbound

This paper cites Generative AI for Controllable Protein Sequence Design: A Survey.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search Generative AI for Controllable Protein Sequence Design: A Survey

Reference 49

Resolution: verified exact; local_arxiv, observed 2026-08-07T11:58:52.683940Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

Observation 246dd1ca-f324-436a-8a00-2d04c7b5a189 · outbound

This paper cites Bridge-if: Learning inverse protein folding with markov bridges.

ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search Bridge-if: Learning inverse protein folding with markov bridges

Reference 50

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T11:58:53.246995Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

Pith citing papers

Observation bccdb030-20b2-4656-b075-5c37228827c1 · inbound

HD-Prot: A Protein Language Model for Joint Sequence-Structure Modeling with Continuous Structure Tokens cites this paper.

HD-Prot: A Protein Language Model for Joint Sequence-Structure Modeling with Continuous Structure Tokens ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search

Reference 2023

Resolution: unresolved; no resolver link, observed 2026-08-03T16:07:37.554602Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 87612d70-13f4-49cf-a831-d1b84c1ae824 · inbound

MP2D: Constrained Monte Carlo Tree-Guided Diffusion for Multi-Objective Protein Sequence Design cites this paper.

MP2D: Constrained Monte Carlo Tree-Guided Diffusion for Multi-Objective Protein Sequence Design ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search

Reference 20

Resolution: verified exact; arxiv_id, observed 2026-05-11T22:16:13.352416Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.

Observation 3f4fd830-8ffc-4034-9503-55d014eea803 · inbound

GeoCycler: Reward-Aligned 3D Diffusion for Constraint-Conditioned Cyclic Peptide Design cites this paper.

GeoCycler: Reward-Aligned 3D Diffusion for Constraint-Conditioned Cyclic Peptide Design ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search

Reference 67

Resolution: verified exact; arxiv_id, observed 2026-05-25T02:46:33.478794Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-10T06:31:04.303077+00:00.