Paper Citation Record · LEDGER

MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model

As of 17 August 2026, this Paper Citation Record lists 46 of 46 outbound references and 0 inbound Pith citation observations for arXiv:2607.23607.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2607.23607 v1

Coverage vector

measured 46 of 46 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-07-30T17:47:26.935398Z

measured 46 of 46 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-17T06:30:58.91139+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

46 of 46 outbound references displayed

verified exact1
verified fuzzy0
unresolved44
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External citation measurements

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Outbound references

Observation 41366a70-98e6-49a4-8674-2f15ed382a84 · outbound

This paper cites Dorrestein.

MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model Dorrestein

Reference 1

Resolution: unresolved; no resolver link, observed 2026-07-30T17:47:26.770765Z

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Unavailable: canonical work link unavailable.

Observation a1b7a2d8-d690-4249-865f-eab13e1f186c · outbound

This paper cites FRIGID: Scaling Diffusion-Based Molecular Generation from Mass Spectra at Training and Inference Time.

MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model FRIGID: Scaling Diffusion-Based Molecular Generation from Mass Spectra at Training and Inference Time

Reference 2

Resolution: unresolved; no resolver link, observed 2026-07-30T17:47:26.781006Z

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Observation 06960283-aaf6-47f6-ab38-da5da13404af · outbound

This paper cites DiffMS: Diffusion Generation of Molecules Conditioned on Mass Spectra.

MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model DiffMS: Diffusion Generation of Molecules Conditioned on Mass Spectra

Reference 3

Resolution: unresolved; no resolver link, observed 2026-07-30T17:47:26.785672Z

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Observation 6c2b241e-6bb5-4944-8228-89346c7e55d9 · outbound

This paper cites de Jonge, Adamo Young, Fleming Kretschmer, Raman Samusevich, Janne Heirman, Fei Wang, Luke Zhang, Kai Dührkop, et al.

MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model de Jonge, Adamo Young, Fleming Kretschmer, Raman Samusevich, Janne Heirman, Fei Wang, Luke Zhang, Kai Dührkop, et al

Reference 4

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Observation a7e3270d-72c9-4cc0-a6e9-b0a0ea3ab6fb · outbound

This paper cites an unresolved cited work.

MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model Unresolved cited work

Reference 5

Resolution: unresolved; no resolver link, observed 2026-07-30T17:47:26.793404Z

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Observation 83898639-9b37-4a9f-9066-3040913c6c61 · outbound

This paper cites an unresolved cited work.

MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model Unresolved cited work

Reference 6

Resolution: unresolved; no resolver link, observed 2026-07-30T17:47:26.796737Z

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Observation bd2119b4-b168-4e51-86f9-04b225e04c06 · outbound

This paper cites ChemBERTa: Large-Scale Self-Supervised Pretraining for Molecular Property Prediction.

MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model ChemBERTa: Large-Scale Self-Supervised Pretraining for Molecular Property Prediction

Reference 7

Resolution: unresolved; no resolver link, observed 2026-07-30T17:47:26.800296Z

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Observation 1bd4d9f9-a32e-498c-af16-09ab3e5df7f0 · outbound

This paper cites de Jonge, Joris J.

MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model de Jonge, Joris J

Reference 8

Resolution: unresolved; no resolver link, observed 2026-07-30T17:47:26.804213Z

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Observation d5065afb-8522-41d1-8149-86885cd32e10 · outbound

This paper cites Hoffmann, Daniel Petras, William H.

MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model Hoffmann, Daniel Petras, William H

Reference 9

Resolution: unresolved; no resolver link, observed 2026-07-30T17:47:26.807495Z

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Observation b55faba7-bb0d-43a6-beb0-36b6f3af7f35 · outbound

This paper cites an unresolved cited work.

MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model Unresolved cited work

Reference 10

Resolution: unresolved; no resolver link, observed 2026-07-30T17:47:26.810470Z

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Observation 88626d48-a502-4273-8538-d4a88229b40b · outbound

This paper cites an unresolved cited work.

MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model Unresolved cited work

Reference 11

Resolution: unresolved; no resolver link, observed 2026-07-30T17:47:26.817415Z

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Observation eb8f2356-055b-484f-9910-316677b44d64 · outbound

This paper cites Franco, N.

MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model Franco, N

Reference 12

Resolution: malformed identifier; no resolver link, observed 2026-07-30T17:47:26.824179Z

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Observation 98cc237c-1c58-4e9b-a8db-85bc4d9a87ce · outbound

This paper cites Xavier, and Connor W.

MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model Xavier, and Connor W

Reference 13

Resolution: unresolved; no resolver link, observed 2026-07-30T17:47:26.828170Z

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Observation f6446acc-e60d-45d5-8617-b65b143b86d5 · outbound

This paper cites an unresolved cited work.

MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model Unresolved cited work

Reference 14

Resolution: unresolved; no resolver link, observed 2026-07-30T17:47:26.831458Z

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Observation 0f488f86-ca1b-4204-aad5-972fe97b9709 · outbound

This paper cites SMILES Transformer: Pre-trained Molecular Fingerprint for Low Data Drug Discovery.

MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model SMILES Transformer: Pre-trained Molecular Fingerprint for Low Data Drug Discovery

Reference 15

Resolution: unresolved; no resolver link, observed 2026-07-30T17:47:26.834486Z

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Observation 1ff35bff-c5c3-4367-9742-81ae6cd0d3a1 · outbound

This paper cites an unresolved cited work.

MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model Unresolved cited work

Reference 16

Resolution: unresolved; no resolver link, observed 2026-07-30T17:47:26.838148Z

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Observation 1adb5cac-0cf3-45a3-8a4f-4661e1f065e4 · outbound

This paper cites LoRA: Low-Rank Adaptation of Large Language Models.

MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model LoRA: Low-Rank Adaptation of Large Language Models

Reference 17

Resolution: unresolved; no resolver link, observed 2026-07-30T17:47:26.841482Z

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Observation 17fcb57f-4174-4451-90ee-2b3a08833b4c · outbound

This paper cites an unresolved cited work.

MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model Unresolved cited work

Reference 18

Resolution: unresolved; no resolver link, observed 2026-07-30T17:47:26.845067Z

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Observation 7cb566aa-c2e4-4ff6-ad35-36df7a9561d2 · outbound

This paper cites Math- iowetz, and Markus Boehm.

MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model Math- iowetz, and Markus Boehm

Reference 19

Resolution: verified exact; doi, observed 2026-07-30T17:50:53.602882Z

Source-reported events for the cited work

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Observation 18766b8a-4c41-4793-bbcd-f1bf36320989 · outbound

This paper cites an unresolved cited work.

MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model Unresolved cited work

Reference 20

Resolution: unresolved; no resolver link, observed 2026-07-30T17:47:26.851513Z

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Observation 08597b99-b970-411d-b131-857f57a0dc76 · outbound

This paper cites an unresolved cited work.

MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model Unresolved cited work

Reference 21

Resolution: unresolved; no resolver link, observed 2026-07-30T17:47:26.854783Z

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Observation 83448789-04fb-4860-bf3b-c9fd1789b7d8 · outbound

This paper cites Litsa, Vijil Chenthamarakshan, Payel Das, and Lydia E.

MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model Litsa, Vijil Chenthamarakshan, Payel Das, and Lydia E

Reference 22

Resolution: unresolved; no resolver link, observed 2026-07-30T17:47:26.858188Z

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Observation c5b6efaa-a2a8-4e78-a145-18153d988d31 · outbound

This paper cites Fromer, and Connor W.

MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model Fromer, and Connor W

Reference 23

Resolution: unresolved; no resolver link, observed 2026-07-30T17:47:26.861448Z

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Observation ab1fde61-4fc7-4a5a-9a96-2ea9a693be36 · outbound

This paper cites an unresolved cited work.

MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model Unresolved cited work

Reference 24

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Observation 98d012e2-6dcc-48fc-b8f5-d7693a557023 · outbound

This paper cites an unresolved cited work.

MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model Unresolved cited work

Reference 25

Resolution: unresolved; no resolver link, observed 2026-07-30T17:47:26.868422Z

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Observation 4fdb6fd2-f9a0-496d-8c41-0e30c49efc01 · outbound

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MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model Unresolved cited work

Reference 26

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Observation 68350c3e-aeeb-4a08-a610-2d4583033375 · outbound

This paper cites an unresolved cited work.

MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model Unresolved cited work

Reference 27

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Observation 88b319ee-a9d0-412e-8f28-ca6ce0ccd47f · outbound

This paper cites an unresolved cited work.

MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model Unresolved cited work

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MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model Unresolved cited work

Reference 29

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Observation 44f7591a-900d-4522-979f-f16e1bb8c4d5 · outbound

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MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model Unresolved cited work

Reference 30

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Observation 771d4c7d-ac43-44b9-951c-eb78a90f879a · outbound

This paper cites an unresolved cited work.

MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model Unresolved cited work

Reference 31

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Observation 8b6696ee-7105-4ccd-844f-b621e3230cb3 · outbound

This paper cites an unresolved cited work.

MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model Unresolved cited work

Reference 32

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Observation e6f1dbfd-1708-4cde-b5c2-5ce4ed069b7b · outbound

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MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model GP-MoLFormer: A Foundation Model For Molecular Generation

Reference 33

Resolution: unresolved; no resolver link, observed 2026-07-30T17:47:26.896796Z

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Observation ed3f40b0-099a-420a-8d3d-27d295da812b · outbound

This paper cites Schymanski, Sebastian Wolf, Juliane Hollender, and Steffen Neumann.

MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model Schymanski, Sebastian Wolf, Juliane Hollender, and Steffen Neumann

Reference 34

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Observation 1cc8acf1-7f23-4c9b-aa66-44e779a83559 · outbound

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MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model Shrivastava, Neil Swainston, Sudeshna Samanta, Ian Roberts, Marc Wright Muelas, and Douglas B

Reference 35

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Observation cc5303b5-089c-4e2f-b386-353976b6cb75 · outbound

This paper cites Stravs, Kai Dührkop, Sebastian Böcker, and Nicola Zamboni.

MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model Stravs, Kai Dührkop, Sebastian Böcker, and Nicola Zamboni

Reference 36

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Observation 180debc4-c50e-40b1-89fb-abb4459264ef · outbound

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MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model Unresolved cited work

Reference 37

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Observation f48c09da-ad6c-4124-98cb-01ff1ef7c4c1 · outbound

This paper cites Ucak, Ikuo Ashyrmamatov, and Juyong Lee.

MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model Ucak, Ikuo Ashyrmamatov, and Juyong Lee

Reference 38

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Observation fbb8a4c7-4fcf-42bd-82a5-566dc3ad7746 · outbound

This paper cites Gomez, Lukasz Kaiser, and Illia Polosukhin.

MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model Gomez, Lukasz Kaiser, and Illia Polosukhin

Reference 39

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Observation d8317d29-eac8-4289-ab17-14e11c49ac0f · outbound

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MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model Unresolved cited work

Reference 40

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MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model Carver, Vanessa V

Reference 41

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Observation 5a15d4ba-03ad-4f9b-a51b-706551341391 · outbound

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MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model Unresolved cited work

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Resolution: unresolved; no resolver link, observed 2026-07-30T17:47:26.928247Z

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This paper cites an unresolved cited work.

MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model Unresolved cited work

Reference 43

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This paper cites confidently wrong.

MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model confidently wrong

Reference 44

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Observation 09d66491-7e6f-4806-b0c3-18863e18397f · outbound

This paper cites an unresolved cited work.

MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model Unresolved cited work

Reference 2015

Resolution: unresolved; no resolver link, observed 2026-07-30T17:47:26.813798Z

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Observation 00a1709c-68a2-44a6-9143-d3e24fb8c6e8 · outbound

This paper cites InProceedings of the 2022 Conference on Empirical Methods in Natural Language Processing (EMNLP).

MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model InProceedings of the 2022 Conference on Empirical Methods in Natural Language Processing (EMNLP)

Reference 2022

Resolution: unresolved; no resolver link, observed 2026-07-30T17:47:26.820689Z

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Pith citing papers

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