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Self-Improved Retrosynthetic Planning

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arxiv 2106.04880 v1 pith:KKU5SPNY submitted 2021-06-09 cs.LG q-bio.QM

classification cs.LGq-bio.QM
keywords reactionpathwaysproblemreactionsretrosyntheticdnnsplanningexpand
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Retrosynthetic planning is a fundamental problem in chemistry for finding a pathway of reactions to synthesize a target molecule. Recently, search algorithms have shown promising results for solving this problem by using deep neural networks (DNNs) to expand their candidate solutions, i.e., adding new reactions to reaction pathways. However, the existing works on this line are suboptimal; the retrosynthetic planning problem requires the reaction pathways to be (a) represented by real-world reactions and (b) executable using "building block" molecules, yet the DNNs expand reaction pathways without fully incorporating such requirements. Motivated by this, we propose an end-to-end framework for directly training the DNNs towards generating reaction pathways with the desirable properties. Our main idea is based on a self-improving procedure that trains the model to imitate successful trajectories found by itself. We also propose a novel reaction augmentation scheme based on a forward reaction model. Our experiments demonstrate that our scheme significantly improves the success rate of solving the retrosynthetic problem from 86.84% to 96.32% while maintaining the performance of DNN for predicting valid reactions.

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Cited by 2 Pith papers

Reviewed papers in the Pith corpus that reference this work. Sorted by Pith novelty score. Full citation record

  1. URSA: Chemistry-Aware Benchmark for Utilitarian Retrosynthesis Assessment

    cs.LG 2026-07 accept novelty 6.0 of 10

    Specialized retrosynthesis models outperform LLMs on chemically plausible multi-step routes when scored by the new URSA Solv-2 protocol using ChemCensor.

  2. Tango*: Constrained synthesis planning using chemically informed value functions

    cs.CE 2024-12 conditional novelty 6.0 of 10

    Tango* uses a computed molecular similarity reward (TANGO) inside Retro* to solve starting material-constrained retrosynthesis with higher success and fewer expansions than neural value function baselines.

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