Typed states for the displayed outbound observations.
Source: paper_references, paper_reference_links, observed 2026-08-15T22:31:23.515552Z
Paper Citation Record · LEDGER
As of 18 August 2026, this Paper Citation Record lists 53 of 53 outbound references and 2 inbound Pith citation observations for arXiv:2505.07086.
A citation records a reference. It does not transfer a finding from one paper to another.
Typed states for the displayed outbound observations.
Source: paper_references, paper_reference_links, observed 2026-08-15T22:31:23.515552Z
One-hop event checks from named stored sources.
Source: scholarly_work_events, retraction_status_cache, observed 2026-08-18T06:34:40.430872+00:00
Pith citing papers itemized under the disclosed page cap.
Source: paper_references, paper_reference_links, observed 2026-06-26T00:43:23.068231Z
A source-named dated measurement, never combined with another source.
Source: arxiv_reference, observed 2026-07-04T16:29:56.569189Z
53 of 53 outbound references displayed
External citation measurements
No source-named external measurement is stored.
Observation 6717c3f2-b984-481b-b9e7-6b7662e6addb · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Application of combinatorial optimization strategies in synthetic biology
Reference 1
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.
Observation 5be4c125-29b4-4156-8036-d3a5d079046a · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Designing strong inducible synthetic promoters in yeasts
Reference 2
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.
Observation dbcbbf7d-ba0f-4440-8d05-f334187956e6 · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Crispr guide rna design for research applications
Reference 3
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.
Observation e9b46636-b86d-41f4-8b5b-8d09b8a4c0b0 · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Genome-wide crispr guide rna design and specificity analysis with guidescan2
Reference 4
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.
Observation a43865e1-63b0-4c50-9f9c-277bb01db8bc · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Synthetic promoters in gene therapy: Design approaches, features and applications
Reference 5
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.
Observation 362a3c50-4f6b-45fe-aaf9-0cbbdccd5960 · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design All-small-molecule organic solar cells with over 14% efficiency by optimizing hierarchical morphologies
Reference 6
Source-reported events for the cited work
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Observation afb02246-26ce-4ccb-902e-81d1b7469837 · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Novel strategies to optimize the amplification of single-stranded dna
Reference 7
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.
Observation 2ef24591-eb02-44a4-b88f-0b7c17f171e3 · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Therapeutic strategies to reduce the toxicity of misfolded protein oligomers
Reference 8
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.
Observation 4c082e91-c2f0-4bfc-ac90-bbe75d512c77 · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Toxinpred2: an improved method for predicting toxicity of proteins
Reference 9
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.
Observation c33a6bf2-d2e6-464b-94e2-6a36f9877f5e · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Neural network conditioned to produce thermophilic protein sequences can increase thermal stability
Reference 10
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.
Observation 85a66f4e-a8b9-4dd5-b066-fcae71b0b7af · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design The toxicity of protein aggregates: new insights into the mechanisms, 2023
Reference 11
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.
Observation c30f9145-56f6-4b83-8121-307742ae742d · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Misfolded protein oligomers: Mechanisms of formation, cytotoxic effects, and pharmacological approaches against protein misfolding diseases
Reference 12
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.
Observation 8e8dd641-3c8d-4e36-9590-ca74a1d88f91 · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Multiobjective optimization using evolutionary algorithms—a comparative case study
Reference 13
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.
Observation 5340b89f-72f3-4ef9-9309-481d562f1155 · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Multi-objective optimisation using evolutionary algorithms: an introduction
Reference 14
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.
Observation 980f9406-8e2d-4e6c-b85d-898491defe6f · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Combo: An efficient bayesian optimization library for materials science
Reference 15
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.
Observation cd169b1a-654e-4293-b392-737a47172f97 · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Bayesian optimization with evolutionary and structure-based regularization for directed protein evolution
Reference 16
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.
Observation ccc24a6e-4af5-4b0f-91bd-e4575871492b · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Multi-objective de novo drug design with conditional graph generative model
Reference 17
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.
Observation 33a03e15-82f2-4f83-94fe-4541f0787b77 · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Combining multi-objective evolutionary algorithms with deep generative models towards focused molecular design
Reference 18
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.
Observation 0c2f67f1-4ee3-430d-b323-be490547bbc0 · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Proud: Pareto-guided diffusion model for multi-objective generation
Reference 19
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.
Observation ba1dc9d5-9962-48b1-b385-120851742ad1 · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design ParetoFlow: Guided Flows in Multi-Objective Optimization
Reference 20
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.
Observation ba6bbd00-710c-4a5d-909e-0bfd597f9ba6 · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Challenges of continuous global optimization in molecular structure prediction
Reference 21
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.
Observation ea66dd16-3a7d-408c-b8c6-60f4484cf777 · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design A Continuous Relaxation for Discrete Bayesian Optimization
Reference 22
Source-reported events for the cited work
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Observation ef9b27e2-9368-408e-8f80-4caecbaff332 · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Peptune: De novo generation of therapeutic peptides with multi-objective-guided discrete diffusion
Reference 23
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.
Observation d8b17fc0-d7a6-4577-baa0-b3f5c2cfc572 · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Simple and effective masked diffusion language models
Reference 24
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.
Observation a2364cdd-72a7-44fe-9273-0b4249813cfd · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Discrete flow matching
Reference 25
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.
Observation 9259fdde-c849-4201-8149-51e8b6768e02 · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Exploring discrete flow matching for 3d de novo molecule generation
Reference 26
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.
Observation 9eb735a0-9014-47ae-9e31-e4caeda7c55f · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Dirichlet flow matching with applications to dna sequence design.Proceedings of the 41st International Conference on Machine Learning (ICML), 2024
Reference 27
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.
Observation 74f14f05-e883-4322-b4f8-22a3662fb9aa · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Fisher flow matching for generative modeling over discrete data
Reference 28
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.
Observation 4bef0d1d-3158-4b94-bb11-1cf626bb6921 · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Gumbel-Softmax Flow Matching with Straight-Through Guidance for Controllable Biological Sequence Generation
Reference 29
Source-reported events for the cited work
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Observation 1b875156-62df-4343-9056-8e94f4e19edd · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Unlocking guid- ance for discrete state-space diffusion and flow models
Reference 30
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.
Observation 77ae13ca-13de-477c-94c1-b25afd35c354 · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Pepnn: a deep attention model for the identification of peptide binding sites
Reference 31
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.
Observation b821b222-b78e-4779-ac37-8664c4ba2f24 · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Biolip2: an updated structure database for biologically relevant ligand–protein interactions
Reference 32
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.
Observation 0458834b-cbeb-4272-8cf1-8d8c3af99636 · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Learning to design protein-protein interactions with enhanced generalization
Reference 33
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation 1ef74fc5-1cc5-4b2f-a108-ac4ff2610eb2 · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Accurate structure prediction of biomolecular interactions with alphafold 3
Reference 34
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation 0a5018a8-4921-4b64-bafb-414f6405d183 · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Unresolved cited work
Reference 35
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation 2e5e9ae9-878d-4b4b-a51a-111af3b75ee5 · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Admet-ai: a machine learning admet platform for evaluation of large-scale chemical libraries
Reference 36
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.
Observation c97a2620-c8c2-4187-9099-09c49f895c1f · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design An evolutionary many-objective optimization algorithm using reference-point-based nondominated sorting approach, part i: solving problems with box constraints
Reference 37
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.
Observation ab36a108-ea1d-498f-97a2-a67f3a3ce68c · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Sms-emoa: Multiobjective selection based on dominated hypervolume.European journal of operational research, 181(3):1653–1669, 2007
Reference 38
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.
Observation e9d2ec75-2e89-4d5b-8ade-20ff349cf4ef · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Spea2: Improving the strength pareto evolutionary algorithm
Reference 39
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.
Observation 2178a037-d7c6-4001-ba07-bd7b9ed7a821 · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Mopso: A proposal for multiple objective particle swarm optimization
Reference 40
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.
Observation ec8083e0-7c89-4d7b-b147-178595199eb5 · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Predicting dna structure using a deep learning method
Reference 41
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.
Observation ab34be1a-064a-4ef6-a621-19b839e10aab · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design U-net: Convolutional networks for biomedical image segmentation
Reference 42
Source-reported events for the cited work
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Observation 83467124-7158-4bf5-b5cf-5314ea0a3a83 · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Evolutionary-scale prediction of atomic-level protein structure with a language model
Reference 43
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation a38dc58e-4721-4894-8802-add03e4142d3 · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Interpretation of allele-specific chromatin accessibility us- ing cell state–aware deep learning
Reference 44
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.
Observation 46c98555-b029-4aee-863e-c6806afeaa0d · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, dna-binding proteins and nucleosome position
Reference 45
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.
Observation 668c0d87-93ee-40c5-95f3-edbf24ac1e42 · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Pepland: a large-scale pre-trained peptide representation model for a comprehensive landscape of both canonical and non-canonical amino acids
Reference 46
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation 1b092532-43d8-414a-9082-a6a4b01e49e5 · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Peptidebert: A language model based on transformers for peptide property prediction
Reference 47
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.
Observation 15f99e59-52f5-4ad8-b153-8e3f21fe1eb6 · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Pedregosa, G
Reference 48
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation 8a195579-37ec-4545-90ad-49c9108bcca1 · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Optuna: A next-generation hyperparameter optimization framework
Reference 49
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.
Observation aef615cb-f53e-44cc-91a3-64ec67bc8f68 · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Peplife: a repository of the half-life of peptides
Reference 50
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.
Observation 9f7bbabc-a257-4024-af66-5a1e570d38c0 · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Peptherdia: database and structural composition analysis of approved peptide therapeutics and diagnostics
Reference 51
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.
Observation dc084539-c255-4401-87ac-c41a355adfe3 · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Thpdb2: compilation of fda approved therapeutic peptides and proteins
Reference 52
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.
Observation fea45130-b599-4979-bfa7-a35328fa9af2 · outbound
Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design Mega-scale experimental analysis of protein folding stability in biology and design
Reference 53
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.
Observation 5273d9a4-80ae-4b60-b099-871fde40456b · inbound
MP2D: Constrained Monte Carlo Tree-Guided Diffusion for Multi-Objective Protein Sequence Design Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design
Reference 7
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.
Observation ee53e9fc-119d-40e0-b4c6-4898e3315d81 · inbound
A Time-Reparameterized Cumulative Intensity Extrapolation Sampler for Discrete Flow Matching Multi-Objective-Guided Discrete Flow Matching for Controllable Biological Sequence Design
Reference 3
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-18T06:34:40.430872+00:00.