Pith Number

pith:CRIFT2SU

pith:2026:CRIFT2SUAKF7MBCBSXLQMQVX5I

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CudaMon: An R Package to Monitor NVIDIA GPUs, Showcased by Monitoring a GPU-accelerated Single-cell Analysis Workflow in R

Davide Risso, Gabriele Sales, Mohammad Amin Zadenoori, Riccardo Ceccaroni

CudaMon is an R package that monitors NVIDIA GPU metrics in real time for accelerated computational workflows.

arxiv:2605.13928 v1 · 2026-05-13 · stat.CO

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\pithnumber{CRIFT2SUAKF7MBCBSXLQMQVX5I}

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The bundle contains the canonical record plus signed events. A mirror can host it anywhere and recompute the same current state with the deterministic merge algorithm.

Claims

C1strongest claim

We introduce CudaMon, an R package providing real-time monitoring of GPU utilization, memory, temperature, and power draw via NVML, along with data export and visualization utilities. Monitoring a GPU-accelerated single-cell RNA-seq pipeline (1M brain cells, RAPIDS workflow) shows that compute-intensive steps (PCA, UMAP, t-SNE) exceed 90% GPU utilization, while data management phases reveal bottlenecks.

C2weakest assumption

The NVML-based monitoring accurately captures GPU metrics in real time without adding meaningful overhead or interfering with the monitored GPU-accelerated computations.

C3one line summary

CudaMon is a new R package enabling direct real-time GPU monitoring for R users to optimize and debug GPU-accelerated workflows, demonstrated on a large single-cell RNA-seq pipeline.

References

15 extracted · 15 resolved · 0 Pith anchors

[1] I tried a bunch of things: the dangers of unexpected overfitting in classification , author=. bioRxiv , volume=. 2020 , publisher= 2020

[2] Communications of the ACM , volume= 2012

[3] Mass Spectrometry Data Analysis in Proteomics , pages= 2020

[4] Cazzaniga, Paolo and Besozzi, Daniela and Merelli, Ivan and Manzoni, Luca , volume=. 2020 , publisher= 2020

[5] Scientific Visualization , author=. 2014 , publisher= 2014

Receipt and verification

First computed	2026-05-17T23:39:14.010379Z
Builder	pith-number-builder-2026-05-17-v1
Signature	Pith Ed25519 (`pith-v1-2026-05`) · public key
Schema	pith-number/v1.0

Canonical hash

145059ea54028bf6044195d70642b7ea1e8abff966c843e62ebd10280cc61dd1

Aliases

arxiv: 2605.13928 · arxiv_version: 2605.13928v1 · doi: 10.48550/arxiv.2605.13928 · pith_short_12: CRIFT2SUAKF7 · pith_short_16: CRIFT2SUAKF7MBCB · pith_short_8: CRIFT2SU

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Verify this Pith Number yourself

curl -sH 'Accept: application/ld+json' https://pith.science/pith/CRIFT2SUAKF7MBCBSXLQMQVX5I \
  | jq -c '.canonical_record' \
  | python3 -c "import sys,json,hashlib; b=json.dumps(json.loads(sys.stdin.read()), sort_keys=True, separators=(',',':'), ensure_ascii=False).encode(); print(hashlib.sha256(b).hexdigest())"
# expect: 145059ea54028bf6044195d70642b7ea1e8abff966c843e62ebd10280cc61dd1

Canonical record JSON

{
  "metadata": {
    "abstract_canon_sha256": "8a6a6554c269ea92b99ec10bdf943f102c63254f650a3568e3a6857550a3f33b",
    "cross_cats_sorted": [],
    "license": "http://creativecommons.org/licenses/by/4.0/",
    "primary_cat": "stat.CO",
    "submitted_at": "2026-05-13T15:47:21Z",
    "title_canon_sha256": "d91137f9ad8257a2a732b93e4a86084cebffb2ab6f6f51fbaf1efd366911eed3"
  },
  "schema_version": "1.0",
  "source": {
    "id": "2605.13928",
    "kind": "arxiv",
    "version": 1
  }
}