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Marek Cieplak

Identifiers

  • name variant Marek Cieplak 0.60 · backfill

Papers (73)

  1. Self-assembly of model proteins into virus capsids q-bio.BM · 2018 · author #2
  2. Disordered peptide chains in an {\alpha}-C-based coarse-grained model q-bio.BM · 2018 · author #2
  3. Proteins at air-water and oil-water interfaces in an all-atom model q-bio.BM · 2018 · author #2
  4. Structural entanglements in protein complexes q-bio.BM · 2017 · author #3
  5. Structural changes in barley protein LTP1 isoforms at air-water interfaces q-bio.BM · 2017 · author #2
  6. Topological transformations in proteins: effects of heating and proximity of an interface q-bio.BM · 2017 · author #3
  7. Unfolding knots by proteasome-like systems: simulations of the behaviour of folded and neurotoxic proteins q-bio.BM · 2016 · author #4
  8. Stiffness of the C-terminal disordered linker affects the geometry of the active site in endoglucanase Cel8A q-bio.BM · 2016 · author #2
  9. Criteria for folding in structure-based models of proteins q-bio.BM · 2016 · author #2
  10. Cotranslational folding of deeply knotted proteins physics.bio-ph · 2015 · author #2
  11. Multiple folding pathways of proteins with shallow knots and co-translational folding physics.bio-ph · 2015 · author #2
  12. Unbinding and unfolding of adhesion protein complexes through stretching: Interplay between shear and tensile mechanical clamps q-bio.BM · 2015 · author #3
  13. Citrate synthase proteins in extremophilic organisms: Studies within a structure-based model q-bio.BM · 2015 · author #2
  14. Aqueous Amino Acids and Proteins Near the Surface of Gold in Hydrophilic and Hydrophobic Force Fields q-bio.BM · 2014 · author #2
  15. Amino acids and proteins at ZnO-water interfaces in molecular dynamics simulations q-bio.BM · 2014 · author #2
  16. Interactions of aqueous amino acids and proteins with the (110) surface of ZnS in molecular dynamics simulations q-bio.BM · 2014 · author #2
  17. Formation of Cystine Slipknots in Dimeric Proteins q-bio.BM · 2013 · author #2
  18. Cystine plug and other novel mechanisms of large mechanical stability in dimeric proteins q-bio.BM · 2012 · author #2
  19. Molecular jamming - the cystine slipknot mechanical clamp in all-atom simulations q-bio.BM · 2011 · author #4
  20. Nanoindentation of virus capsids in a molecular model q-bio.BM · 2010 · author #1
  21. Mechanical Strength of 17 134 Model Proteins and Cysteine Slipknots q-bio.BM · 2009 · author #3
  22. First-principles design of nanomachines cond-mat.soft · 2009 · author #2
  23. Hydrodynamic Interactions in Protein Folding q-bio.BM · 2008 · author #1
  24. Stretching and twisting of the DNA duplexes in coarse grained dynamical models q-bio.BM · 2008 · author #2
  25. Effects of confinement and crowding on folding of model proteins q-bio.BM · 2008 · author #2
  26. How knots influence properties of proteins q-bio.BM · 2008 · author #4
  27. Proteins in a shear flow q-bio.BM · 2007 · author #2
  28. Tightening of knots in proteins q-bio.BM · 2007 · author #4
  29. Influence of Hydrodynamic Interactions on Mechanical Unfolding of Proteins q-bio.BM · 2007 · author #2
  30. Stretching of proteins in a uniform flow q-bio.BM · 2006 · author #2
  31. Nanoscale fluid flows in the vicinity of patterned surfaces cond-mat.soft · 2006 · author #1
  32. Protein folding in a force-clamp q-bio.BM · 2006 · author #1
  33. Thermal unfolding of proteins q-bio.BM · 2006 · author #1
  34. Stretching of proteins in a force-clamp q-bio.BM · 2005 · author #2
  35. Geometry of proteins: hydrogen bonding, sterics and marginally compact tubes q-bio.BM · 2005 · author #2
  36. Mechanical Stretching of Proteins: Calmodulin and Titin q-bio.BM · 2004 · author #1
  37. Chirality and Protein Folding q-bio.BM · 2004 · author #2
  38. Mechanical properties of the domains of titin in a Go-like model q-bio.BM · 2004 · author #1
  39. Lattice tube model of proteins q-bio.BM · 2004 · author #2
  40. What one can learn from experiments about the elusive transition state? q-bio.BM · 2004 · author #2
  41. Cooperativity and Contact Order in Protein Folding q-bio.BM · 2004 · author #1
  42. Thermal effects in stretching of Go-like models of titin and secondary structures q-bio.BM · 2003 · author #1
  43. Stretching of Proteins in the Entropic Limit q-bio.BM · 2003 · author #1
  44. Folding of Proteins in Go Models with Angular Interactions cond-mat.stat-mech · 2003 · author #1
  45. Molecular dynamics simulations of crystallization of hard spheres cond-mat · 2002 · author #2
  46. Effects of Pore Walls and Randomness on Phase Transitions in Porous Media cond-mat.stat-mech · 2002 · author #1
  47. Universality classes in folding times of proteins cond-mat.stat-mech · 2002 · author #1
  48. The range of the contact interactions and the kinetics of the Go models of proteins cond-mat · 2002 · author #1
  49. Prediction of Protein Secondary Structures From Conformational Biases cond-mat.stat-mech · 2002 · author #2
  50. Folding and Stretching in a Go-like Model of Titin cond-mat.stat-mech · 2001 · author #1
  51. Thermal Folding and Mechanical Unfolding Pathways of Protein Secondary Structures cond-mat.soft · 2001 · author #1
  52. Protein threading by learning cond-mat.soft · 2001 · author #2
  53. Motion of grains, droplets, and bubbles in fluid-filled nano-pores cond-mat.stat-mech · 2001 · author #2
  54. Kinetic non-optimality and vibrational stability of proteins cond-mat.stat-mech · 2001 · author #1
  55. Dynamic modeling of gene expression data cond-mat.stat-mech · 2001 · author #3
  56. Boundary conditions at a fluid - solid interface cond-mat.stat-mech · 2000 · author #1
  57. Amino acid classes and the protein folding problem cond-mat.stat-mech · 2000 · author #1
  58. Sequencing of folding events in Go-like proteins cond-mat.stat-mech · 2000 · author #2
  59. Molecular dynamics of flows in the Knudsen regime cond-mat.stat-mech · 2000 · author #1
  60. Dynamical chaos and power spectra in toy models of heteropolymers and proteins cond-mat.stat-mech · 2000 · author #2
  61. Molecular dynamics of folding of secondary structures in Go-type models of proteins cond-mat.stat-mech · 1999 · author #2
  62. Spin analogs of proteins: scaling of "folding" properties cond-mat.stat-mech · 1999 · author #4
  63. Delineation of the Native Basin in Continuum Models of Proteins cond-mat.soft · 1999 · author #2
  64. Folding in two-dimenensional off-lattice models of proteins cond-mat.soft · 1999 · author #2
  65. Scaling of folding properties in simple models of proteins cond-mat.stat-mech · 1999 · author #1
  66. Simple models of proteins with repulsive non-native contacts cond-mat.soft · 1999 · author #2
  67. Energy landscapes, supergraphs, and "folding funnels" in spin systems cond-mat.stat-mech · 1999 · author #3
  68. Master equation approach to protein folding cond-mat.stat-mech · 1998 · author #1
  69. Protein folding and models of dynamics on the lattice cond-mat.stat-mech · 1998 · author #2
  70. Coarse grained description of the protein folding cond-mat.stat-mech · 1998 · author #1
  71. Master equation approach to protein folding and kinetic traps cond-mat.stat-mech · 1998 · author #1
  72. Scaling of the Random-Field Ising Model at Zero Temperature cond-mat.dis-nn · 1997 · author #4
  73. DOMAIN WALLS IN THE QUANTUM TRANSVERSE ISING MODEL cond-mat · 1995 · author #3

Mentions

  • 1509.01067 #2 · backfill · confidence 0.70 Marek Cieplak
  • 1509.01059 #2 · backfill · confidence 0.70 Marek Cieplak
  • 1502.07087 #3 · backfill · confidence 0.70 Marek Cieplak
  • 1502.07075 #2 · backfill · confidence 0.70 Marek Cieplak
  • 1405.7926 #2 · backfill · confidence 0.70 Marek Cieplak
  • 1405.7902 #2 · backfill · confidence 0.70 Marek Cieplak
  • 1405.7892 #2 · backfill · confidence 0.70 Marek Cieplak
  • 1303.6667 #2 · backfill · confidence 0.70 Marek Cieplak
  • 1210.8275 #2 · backfill · confidence 0.70 Marek Cieplak
  • 1102.3342 #4 · backfill · confidence 0.70 Marek Cieplak
  • 1003.3335 #1 · backfill · confidence 0.70 Marek Cieplak
  • 0911.0453 #3 · backfill · confidence 0.70 Marek Cieplak
  • 0904.4037 #2 · backfill · confidence 0.70 Marek Cieplak
  • 0901.0086 #1 · backfill · confidence 0.70 Marek Cieplak
  • 0901.0082 #2 · backfill · confidence 0.70 Marek Cieplak
  • 0811.4581 #2 · backfill · confidence 0.70 Marek Cieplak
  • 0810.0415 #4 · backfill · confidence 0.70 Marek Cieplak
  • 0710.2235 #2 · backfill · confidence 0.70 Marek Cieplak
  • 0706.2380 #4 · backfill · confidence 0.70 Marek Cieplak
  • 0706.1102 #2 · backfill · confidence 0.70 Marek Cieplak

Frequent Coauthors