ProtDBench is a new evaluation benchmark that standardizes protein binder design assessment, reveals verifier-dependent bias in structure predictors, and compares generative methods under fixed 24-hour and diversity-aware criteria.
De novo design of all-atom biomolecular interactions with RFdiffusion3.bioRxiv, 2025
2 Pith papers cite this work. Polarity classification is still indexing.
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Pith papers citing it
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2026 2verdicts
UNVERDICTED 2representative citing papers
Emyx, a compact flow matching model with EDM reparametrization, outperforms larger protein generators on enzyme design benchmarks with substantially lower training compute.
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ProtDBench: A Unified Benchmark of Protein Binder Design and Evaluation
ProtDBench is a new evaluation benchmark that standardizes protein binder design assessment, reveals verifier-dependent bias in structure predictors, and compares generative methods under fixed 24-hour and diversity-aware criteria.
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Emyx: Fast and efficient all-atom protein generation
Emyx, a compact flow matching model with EDM reparametrization, outperforms larger protein generators on enzyme design benchmarks with substantially lower training compute.