PhylaFlow applies hybrid flow matching in BHV tree space to learn posterior-basin transport, reducing initial Tree-KL and improving topology recovery after finite-budget MrBayes refinement on most of eight phylogenetic benchmarks.
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A new tree-conditioned edit-flow model for ancestral sequence reconstruction achieves reasonable accuracy on substitution-only evolved sequences and superior localization of changes on natural indel-rich sequences.
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PhylaFlow: Hybrid Flow Matching in Billera-Holmes-Vogtmann Tree Space for Phylogenetic Inference
PhylaFlow applies hybrid flow matching in BHV tree space to learn posterior-basin transport, reducing initial Tree-KL and improving topology recovery after finite-budget MrBayes refinement on most of eight phylogenetic benchmarks.
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Tree-Conditioned Edit Flows for Ancestral Sequence Reconstruction
A new tree-conditioned edit-flow model for ancestral sequence reconstruction achieves reasonable accuracy on substitution-only evolved sequences and superior localization of changes on natural indel-rich sequences.