GNNs with ontology-derived semantic loss create hierarchy-aware box embeddings of a yeast knowledge graph that raise double-knockout growth prediction R² to 0.377 and generalize to triple knockouts while identifying a validated trait association.
Contrastive Box Embedding for Collaborative Reasoning , isbn =
3 Pith papers cite this work. Polarity classification is still indexing.
citation-role summary
citation-polarity summary
years
2026 3verdicts
UNVERDICTED 3roles
baseline 1polarities
baseline 1representative citing papers
A jointly learned hierarchical index with cross-attention and residual quantization scales exact retrieval in foundational recommendation models, deployed at Meta with additional performance from test-time training on index nodes.
Contrastive FUSE learns node embeddings from partial pairwise supervision and structural signals alone by optimizing a spectral contrastive objective with a lightweight modularity approximation, yielding competitive performance and runtime gains on citation and co-purchase graphs.
citing papers explorer
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Graph Neural Network based Hierarchy-Aware Embeddings of Knowledge Graphs: Applications to Yeast Phenotype Prediction
GNNs with ontology-derived semantic loss create hierarchy-aware box embeddings of a yeast knowledge graph that raise double-knockout growth prediction R² to 0.377 and generalize to triple knockouts while identifying a validated trait association.
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Efficient Retrieval Scaling with Hierarchical Indexing for Large Scale Recommendation
A jointly learned hierarchical index with cross-attention and residual quantization scales exact retrieval in foundational recommendation models, deployed at Meta with additional performance from test-time training on index nodes.
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Fast and Featureless Node Representation Learning with Partial Pairwise Supervision
Contrastive FUSE learns node embeddings from partial pairwise supervision and structural signals alone by optimizing a spectral contrastive objective with a lightweight modularity approximation, yielding competitive performance and runtime gains on citation and co-purchase graphs.