A methodological review of post-2018 evidence-aware protein complex detection methods concludes that transparent graph-based approaches offer the best plausibility-reproducibility tradeoff while calling for harmonized benchmarks and overlap-aware metrics.
Recent advances in deep learning for protein-protein interaction analysis: A compre- hensive review,
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Evidence-Aware Protein Complex Detection: Methods, Benchmarks, and Reproducibility Challenges
A methodological review of post-2018 evidence-aware protein complex detection methods concludes that transparent graph-based approaches offer the best plausibility-reproducibility tradeoff while calling for harmonized benchmarks and overlap-aware metrics.