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arxiv: 2204.10836 · v2 · pith:K7EA23ETnew · submitted 2022-04-22 · 💻 cs.LG · eess.IV

Federated Learning Enables Big Data for Rare Cancer Boundary Detection

Sarthak Pati , Ujjwal Baid , Brandon Edwards , Micah Sheller , Shih-Han Wang , G Anthony Reina , Patrick Foley , Alexey Gruzdev
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Deepthi Karkada Christos Davatzikos Chiharu Sako Satyam Ghodasara Michel Bilello Suyash Mohan Philipp Vollmuth Gianluca Brugnara Chandrakanth J Preetha Felix Sahm Klaus Maier-Hein Maximilian Zenk Martin Bendszus Wolfgang Wick Evan Calabrese Jeffrey Rudie Javier Villanueva-Meyer Soonmee Cha Madhura Ingalhalikar Manali Jadhav Umang Pandey Jitender Saini John Garrett Matthew Larson Robert Jeraj Stuart Currie Russell Frood Kavi Fatania Raymond Y Huang Ken Chang Carmen Balana Jaume Capellades Josep Puig Johannes Trenkler Josef Pichler Georg Necker Andreas Haunschmidt Stephan Meckel Gaurav Shukla Spencer Liem Gregory S Alexander Joseph Lombardo Joshua D Palmer Adam E Flanders Adam P Dicker Haris I Sair Craig K Jones Archana Venkataraman Meirui Jiang Tiffany Y So Cheng Chen Pheng Ann Heng Qi Dou Michal Kozubek Filip Lux Jan Mich\'alek Petr Matula Milo\v{s} Ke\v{r}kovsk\'y Tereza Kop\v{r}ivov\'a Marek Dost\'al V\'aclav Vyb\'ihal Michael A Vogelbaum J Ross Mitchell Joaquim Farinhas Joseph A Maldjian Chandan Ganesh Bangalore Yogananda Marco C Pinho Divya Reddy James Holcomb Benjamin C Wagner Benjamin M Ellingson Timothy F Cloughesy Catalina Raymond Talia Oughourlian Akifumi Hagiwara Chencai Wang Minh-Son To Sargam Bhardwaj Chee Chong Marc Agzarian Alexandre Xavier Falc\~ao Samuel B Martins Bernardo C A Teixeira Fl\'avia Sprenger David Menotti Diego R Lucio Pamela LaMontagne Daniel Marcus Benedikt Wiestler Florian Kofler Ivan Ezhov Marie Metz Rajan Jain Matthew Lee Yvonne W Lui Richard McKinley Johannes Slotboom Piotr Radojewski Raphael Meier Roland Wiest Derrick Murcia Eric Fu Rourke Haas John Thompson David Ryan Ormond Chaitra Badve Andrew E Sloan Vachan Vadmal Kristin Waite Rivka R Colen Linmin Pei Murat Ak Ashok Srinivasan J Rajiv Bapuraj Arvind Rao Nicholas Wang Ota Yoshiaki Toshio Moritani Sevcan Turk Joonsang Lee Snehal Prabhudesai Fanny Mor\'on Jacob Mandel Konstantinos Kamnitsas Ben Glocker Luke V M Dixon Matthew Williams Peter Zampakis Vasileios Panagiotopoulos Panagiotis Tsiganos Sotiris Alexiou Ilias Haliassos Evangelia I Zacharaki Konstantinos Moustakas Christina Kalogeropoulou Dimitrios M Kardamakis Yoon Seong Choi Seung-Koo Lee Jong Hee Chang Sung Soo Ahn Bing Luo Laila Poisson Ning Wen Pallavi Tiwari Ruchika Verma Rohan Bareja Ipsa Yadav Jonathan Chen Neeraj Kumar Marion Smits Sebastian R van der Voort Ahmed Alafandi Fatih Incekara Maarten MJ Wijnenga Georgios Kapsas Renske Gahrmann Joost W Schouten Hendrikus J Dubbink Arnaud JPE Vincent Martin J van den Bent Pim J French Stefan Klein Yading Yuan Sonam Sharma Tzu-Chi Tseng Saba Adabi Simone P Niclou Olivier Keunen Ann-Christin Hau Martin Valli\`eres David Fortin Martin Lepage Bennett Landman Karthik Ramadass Kaiwen Xu Silky Chotai Lola B Chambless Akshitkumar Mistry Reid C Thompson Yuriy Gusev Krithika Bhuvaneshwar Anousheh Sayah Camelia Bencheqroun Anas Belouali Subha Madhavan Thomas C Booth Alysha Chelliah Marc Modat Haris Shuaib Carmen Dragos Aly Abayazeed Kenneth Kolodziej Michael Hill Ahmed Abbassy Shady Gamal Mahmoud Mekhaimar Mohamed Qayati Mauricio Reyes Ji Eun Park Jihye Yun Ho Sung Kim Abhishek Mahajan Mark Muzi Sean Benson Regina G H Beets-Tan Jonas Teuwen Alejandro Herrera-Trujillo Maria Trujillo William Escobar Ana Abello Jose Bernal Jhon G\'omez Joseph Choi Stephen Baek Yusung Kim Heba Ismael Bryan Allen John M Buatti Aikaterini Kotrotsou Hongwei Li Tobias Weiss Michael Weller Andrea Bink Bertrand Pouymayou Hassan F Shaykh Joel Saltz Prateek Prasanna Sampurna Shrestha Kartik M Mani David Payne Tahsin Kurc Enrique Pelaez Heydy Franco-Maldonado Francis Loayza Sebastian Quevedo Pamela Guevara Esteban Torche Cristobal Mendoza Franco Vera Elvis R\'ios Eduardo L\'opez Sergio A Velastin Godwin Ogbole Dotun Oyekunle Olubunmi Odafe-Oyibotha Babatunde Osobu Mustapha Shu'aibu Adeleye Dorcas Mayowa Soneye Farouk Dako Amber L Simpson Mohammad Hamghalam Jacob J Peoples Ricky Hu Anh Tran Danielle Cutler Fabio Y Moraes Michael A Boss James Gimpel Deepak Kattil Veettil Kendall Schmidt Brian Bialecki Sailaja Marella Cynthia Price Lisa Cimino Charles Apgar Prashant Shah Bjoern Menze Jill S Barnholtz-Sloan Jason Martin Spyridon Bakas
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classification 💻 cs.LG eess.IV
keywords datamodelraresharingtumorboundarydemonstratediverse
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Although machine learning (ML) has shown promise in numerous domains, there are concerns about generalizability to out-of-sample data. This is currently addressed by centrally sharing ample, and importantly diverse, data from multiple sites. However, such centralization is challenging to scale (or even not feasible) due to various limitations. Federated ML (FL) provides an alternative to train accurate and generalizable ML models, by only sharing numerical model updates. Here we present findings from the largest FL study to-date, involving data from 71 healthcare institutions across 6 continents, to generate an automatic tumor boundary detector for the rare disease of glioblastoma, utilizing the largest dataset of such patients ever used in the literature (25,256 MRI scans from 6,314 patients). We demonstrate a 33% improvement over a publicly trained model to delineate the surgically targetable tumor, and 23% improvement over the tumor's entire extent. We anticipate our study to: 1) enable more studies in healthcare informed by large and diverse data, ensuring meaningful results for rare diseases and underrepresented populations, 2) facilitate further quantitative analyses for glioblastoma via performance optimization of our consensus model for eventual public release, and 3) demonstrate the effectiveness of FL at such scale and task complexity as a paradigm shift for multi-site collaborations, alleviating the need for data sharing.

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