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Unrestricted Permutation forces Extrapolation: Variable Importance Requires at least One More Model, or There Is No Free Variable Importance

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arxiv 1905.03151 v2 pith:UB6K5K2M submitted 2019-05-01 stat.ME cs.LGstat.ML

classification stat.MEcs.LGstat.ML
keywords modelfeaturesimportancevariabledependencemeasuresplotsthere
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This paper reviews and advocates against the use of permute-and-predict (PaP) methods for interpreting black box functions. Methods such as the variable importance measures proposed for random forests, partial dependence plots, and individual conditional expectation plots remain popular because they are both model-agnostic and depend only on the pre-trained model output, making them computationally efficient and widely available in software. However, numerous studies have found that these tools can produce diagnostics that are highly misleading, particularly when there is strong dependence among features. The purpose of our work here is to (i) review this growing body of literature, (ii) provide further demonstrations of these drawbacks along with a detailed explanation as to why they occur, and (iii) advocate for alternative measures that involve additional modeling. In particular, we describe how breaking dependencies between features in hold-out data places undue emphasis on sparse regions of the feature space by forcing the original model to extrapolate to regions where there is little to no data. We explore these effects across various model setups and find support for previous claims in the literature that PaP metrics can vastly over-emphasize correlated features in both variable importance measures and partial dependence plots. As an alternative, we discuss and recommend more direct approaches that involve measuring the change in model performance after muting the effects of the features under investigation.

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Cited by 3 Pith papers

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    Causal SHAP replaces SHAP's independence assumption with a PC-discovered causal graph and IDA-derived causal strengths, zeroing out features that are correlated but not causal.

  3. IMEX Interaction-Based Model Explanation

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    IMEX's PCS metric — normalized leave-one-feature-out prediction variation — recovers known feature structure on three synthetic datasets, while its interaction metric PCI remains unvalidated.

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