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High-fidelity intensity diffraction tomography with a non-paraxial multiple-scattering model

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arxiv 2207.06532 v2 pith:NBP7IUYU submitted 2022-07-13 physics.optics eess.IV

classification physics.opticseess.IV
keywords modelreconstructionalgorithmmultiple-scatteringscatteringssnpbiologicaldiffraction
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abstract

We propose a novel intensity diffraction tomography (IDT) reconstruction algorithm based on the split-step non-paraxial (SSNP) model for recovering the 3D refractive index (RI) distribution of multiple-scattering biological samples. High-quality IDT reconstruction requires high-angle illumination to encode both low- and high- spatial frequency information of the 3D biological sample. We show that our SSNP model can more accurately compute multiple scattering from high-angle illumination compared to paraxial approximation-based multiple-scattering models. We apply this SSNP model to both sequential and multiplexed IDT techniques. We develop a unified reconstruction algorithm for both IDT modalities that is highly computationally efficient and is implemented by a modular automatic differentiation framework. We demonstrate the capability of our reconstruction algorithm on both weakly scattering buccal epithelial cells and strongly scattering live $\textit{C. elegans}$ worms and live $\textit{C. elegans}$ embryos.

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