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Computing Generalized Ranks of Persistence Modules via Unfolding to Zigzag Modules

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arxiv 2403.08110 v4 pith:MM3U646X submitted 2024-03-12 math.AT cs.CG

classification math.ATcs.CG
keywords modulespersistencegeneralizedmodulerankzigzagalgorithmfull
verification ladder T0 review T1 audit T2 compute T3 formal
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abstract

For a $P$-indexed persistence module ${\sf M}$, the (generalized) rank of ${\sf M}$ is defined as the rank of the limit-to-colimit map for the diagram of vector spaces of ${\sf M}$ over the poset $P$. For $2$-parameter persistence modules, recently a zigzag persistence based algorithm has been proposed that takes advantage of the fact that generalized rank for $2$-parameter modules is equal to the number of full intervals in a zigzag module defined on the boundary of the poset. Analogous definition of boundary for $d$-parameter persistence modules or general $P$-indexed persistence modules does not seem plausible. To overcome this difficulty, we first unfold a given $P$-indexed module ${\sf M}$ into a zigzag module ${\sf M}_{ZZ}$ and then check how many full interval modules in a decomposition of ${\sf M}_{ZZ}$ can be folded back to remain full in a decomposition of ${\sf M}$. This number determines the generalized rank of ${\sf M}$. For special cases of degree-$d$ homology for $d$-complexes, we obtain a more efficient algorithm including a linear time algorithm for degree-$1$ homology in graphs.

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Cited by 1 Pith paper

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  1. Sparsification of the Generalized Persistence Diagrams for Scalability through Gradient Descent

    math.AT 2024-12 conditional novelty 7.0 of 10

    A gradient-descent method selects small sets of intervals that approximate full generalized persistence diagram domains, reducing computation time severalfold with comparable classification accuracy.

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