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Compactifications of phylogenetic systems and species of electrical networks

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arxiv 2408.03431 v4 pith:4P7LMOR5 submitted 2024-08-06 math.CO q-bio.PE

classification math.COq-bio.PE
keywords splitcircularspacessystemselectricalnetworkscactusgraphical
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We describe new spaces and maps. Our graphical map is a visual and numerical correspondence between spaces of circular electrical networks and circular planar split systems. When restricted to the planar circular electrical case, this graphical map finds the split system uniquely associated with the Kalmanson resistance distance of the dual network, matching the induced split system familiar from phylogenetics. This correspondence is extended to compactifications of the respective spaces, taking cactus networks to the cactus split systems defined herein. The graphical map preserves both network components and cactus structure, allowing an elegant enumeration of induced phylogenetic split systems via combinatorial species. We introduce the global spaces of circular planar electrical networks and circular split systems. These new spaces are also CW complexes, but the 0-cells of each are counted by the Bell numbers as opposed to the Catalan numbers. As species, the two sorts of global cacti are seen to be compositions in complementary ways.

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  1. Electrical networks and data analysis in phylogenetics

    math.CO 2024-12 conditional novelty 7.0 of 10

    A Kalmanson metric is an electrical resistance metric if and only if an explicitly constructed matrix lies in the totally nonnegative Isotropic Grassmannian with a nonvanishing Plücker coordinate.

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