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Paper Citation Record · LEDGER

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration

As of 21 August 2026, this Paper Citation Record lists 57 of 57 outbound references and 1 inbound Pith citation observation for arXiv:2508.21468.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2508.21468 v1

Coverage vector

measured 57 of 57 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-05T14:25:31.339421Z

measured 58 of 58 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-21T06:32:19.484+00:00

measured 1 of 1 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-06-28T15:56:09.312666Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: arxiv_reference, observed 2026-07-01T21:56:16.227901Z

Reference resolution

57 of 57 outbound references displayed

  • verified exact2
  • verified fuzzy38
  • unresolved16
  • parse uncertain0
  • malformed identifier1
  • metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation a3d9517c-6948-408d-8383-7af5eb2e1754 · outbound

This paper cites Accurate structure prediction of biomolecular interactions with alphafold 3.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Accurate structure prediction of biomolecular interactions with alphafold 3

Reference 1

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no resolver link, observed 2026-08-05T14:25:26.514834Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

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Observation 4bacf021-a84d-40a9-9ea6-43e7e510f6ef · outbound

This paper cites Protein sequence modelling with bayesian flow networks.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Protein sequence modelling with bayesian flow networks

Reference 2

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verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.922485Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-05T14:25:26.556675Z digest=sha256:f84c5c65b523592a29b8ab341176e2b9171622f373253ae29bc5a9e5c42042ae

Observation 3c3e4d77-9c29-4f60-b393-0b2981d5b957 · outbound

This paper cites Geometric deep learning methods and applications in 3d structure-based drug design.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Geometric deep learning methods and applications in 3d structure-based drug design

Reference 3

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verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.910875Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

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Observation 318f2416-f1ab-4dc7-a27b-fe65ae3fcb43 · outbound

This paper cites Equivariant Energy-Guided SDE for Inverse Molecular Design.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Equivariant Energy-Guided SDE for Inverse Molecular Design

Reference 4

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unresolved
no resolver link, observed 2026-08-05T14:25:26.697348Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-05T14:25:26.697348Z digest=sha256:cdf1a1a1f0cc8f43c725bc8929234c6ed25a78c70d4da2ff5ff9d5cdbf8a871a

Observation b6f900e0-c1be-483d-9404-e370738b467c · outbound

This paper cites Posebusters: Ai-based docking methods fail to generate physically valid poses or generalise to novel sequences.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Posebusters: Ai-based docking methods fail to generate physically valid poses or generalise to novel sequences

Reference 5

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verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.899307Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-05T14:25:26.763247Z digest=sha256:80a7cd8602c3f6e45b664b2950b59f991e5e7aa93b3feff0ee1c0cc39b8883b5

Observation 98ef91fa-49af-4542-ba35-b0d28b6a0347 · outbound

This paper cites Pid- iff: Physics informed diffusion model for protein pocket-specific 3d molecular generation.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Pid- iff: Physics informed diffusion model for protein pocket-specific 3d molecular generation

Reference 6

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verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.888082Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-05T14:25:26.841297Z digest=sha256:4e9c084ad924b604996cf9ebd716f952d6375c9f7ffde651bb543f4f0df3db7c

Observation 179abc6c-775e-479d-be29-aaa145361f06 · outbound

This paper cites Diffusion posterior sampling for general noisy inverse problems.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Diffusion posterior sampling for general noisy inverse problems

Reference 7

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raw_fallback, observed 2026-08-05T14:25:35.877398Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-05T14:25:26.929990Z digest=sha256:78f72c91b05efb6f5ced8ed05b059b44e21347b2a1e09a5f25a7e253091fedbd

Observation af2d385f-5358-4730-b16c-36437d9eadde · outbound

This paper cites Uniprot: a worldwide hub of protein knowledge.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Uniprot: a worldwide hub of protein knowledge

Reference 8

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verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.865764Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-05T14:25:27.024445Z digest=sha256:198ff6bfaeaf07d34d91d77291bf38c1fd766dad7fdd1c5edba5c0011b944df4

Observation c0fac689-af22-4d48-a0e8-9f515df84aca · outbound

This paper cites Multi-parameter optimization: identifying high quality compounds with a balance of properties.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Multi-parameter optimization: identifying high quality compounds with a balance of properties

Reference 9

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verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.855286Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-05T14:25:27.089396Z digest=sha256:16c2f3aa87e5052f92c7040ffc4c7127202a81c6c5d7b831f78e29beabb64bee

Observation 0e59f98b-a02c-401a-a85e-691f2e72b2bf · outbound

This paper cites Comprehensive analysis of kinase inhibitor selectivity.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Comprehensive analysis of kinase inhibitor selectivity

Reference 10

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no resolver link, observed 2026-08-05T14:25:27.169773Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-05T14:25:27.169773Z digest=sha256:94b07c081907c15e7a2265add2dd512c43f780f63a5ea78b8f8448e7bdc0e927

Observation c7ffd768-1954-40ef-875c-57ba0bdf8751 · outbound

This paper cites Diffusion models beat gans on image synthesis.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Diffusion models beat gans on image synthesis

Reference 11

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no resolver link, observed 2026-08-05T14:25:27.249667Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-05T14:25:27.249667Z digest=sha256:eaacf8b8e776818f5ca0da8a3703bf37f5f9e2a4c0fa7637259aaaa700e7957e

Observation 3ab3b6be-f575-469d-9570-4c93c09096df · outbound

This paper cites Autodock vina 1.2.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Autodock vina 1.2

Reference 12

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verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.830458Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-05T14:25:27.314201Z digest=sha256:a056a19574ac6d8a0ae06ff7f7295c7acf7a0accde7aba06bf6b3dadc4a9aea2

Observation 3de22a8b-2936-4993-9244-d8ede7f5e13b · outbound

This paper cites Tweedie’s formula and selection bias.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Tweedie’s formula and selection bias

Reference 13

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no resolver link, observed 2026-08-05T14:25:27.398826Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-05T14:25:27.398826Z digest=sha256:d6455c1f42285b2a063cace7483784410cf5cc51cf66ea8cb4c8d73267871c3e

Observation c622c464-ec52-495b-8f13-9ebf3428af75 · outbound

This paper cites Estimation of synthetic accessibility score of drug-like molecules based on molecular complexity and fragment contributions.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Estimation of synthetic accessibility score of drug-like molecules based on molecular complexity and fragment contributions

Reference 14

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verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.812408Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-05T14:25:27.486828Z digest=sha256:490b61700033224de43d10bf61cb60bbe02e9529a74e8ae11d75df4d11c02551

Observation bff8ed79-5779-4a2b-ae68-5aabff2e0276 · outbound

This paper cites Three-dimensional convolutional neural networks and a cross- docked data set for structure-based drug design.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Three-dimensional convolutional neural networks and a cross- docked data set for structure-based drug design

Reference 15

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verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.801989Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-05T14:25:27.553098Z digest=sha256:3ac3019d86f85f904630b2b98b2eb41934c0d5e08f87a76b5263cf51d57bc00e

Observation 4c77817e-4aab-46b8-a2e1-7ca8182d21d2 · outbound

This paper cites Reinforced genetic algorithm for structure-based drug design.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Reinforced genetic algorithm for structure-based drug design

Reference 16

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verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.791132Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-05T14:25:27.630009Z digest=sha256:bb46de9132ef1700212775047314e280fa27545d6e6003859d3e4432e6a3fd71

Observation 46b43fad-9298-4ff8-82d9-b140a20dca0f · outbound

This paper cites Rethinking Specificity in SBDD: Leveraging Delta Score and Energy-Guided Diffusion.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Rethinking Specificity in SBDD: Leveraging Delta Score and Energy-Guided Diffusion

Reference 17

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no resolver link, observed 2026-08-05T14:25:27.708522Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-05T14:25:27.708522Z digest=sha256:e0d3fab1e7826ef6cdaa0ffd6b76a1ccb5b1c11ef91d9c4db716bea601bb3569

Observation 5ca183c5-1d0b-49a6-9a86-257db7286feb · outbound

This paper cites Bayesian Flow Networks.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Bayesian Flow Networks

Reference 18

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no resolver link, observed 2026-08-05T14:25:27.775723Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-05T14:25:27.775723Z digest=sha256:621e67faa3bd12492967595d444bb470a0f217eda3cc2922d254447df4014844

Observation 7e09d8f5-750d-4f95-8920-39a1015a8a24 · outbound

This paper cites Aligning target-aware molecule diffusion models with exact energy optimization.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Aligning target-aware molecule diffusion models with exact energy optimization

Reference 19

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verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.781390Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-05T14:25:27.893286Z digest=sha256:19959bc7229176005256f893a4576da8306fdbd62d38b8f9a9baf56a3cffaff3

Observation a3d6ecd8-53b9-496b-b6e8-8a0fdb310be9 · outbound

This paper cites 3D Equivariant Diffusion for Target-Aware Molecule Generation and Affinity Prediction.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration 3D Equivariant Diffusion for Target-Aware Molecule Generation and Affinity Prediction

Reference 20

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no resolver link, observed 2026-08-05T14:25:27.970113Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-05T14:25:27.970113Z digest=sha256:1c5aa523a059fb6b6511e42a0956a54a50c5091401c5af772ab5846e99805b3b

Observation 9feb90b4-d6d5-4e3b-bcb0-1fcb0e07f3b5 · outbound

This paper cites DecompDiff: Diffusion Models with Decomposed Priors for Structure-Based Drug Design.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration DecompDiff: Diffusion Models with Decomposed Priors for Structure-Based Drug Design

Reference 21

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no resolver link, observed 2026-08-05T14:25:28.012501Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-05T14:25:28.012501Z digest=sha256:f45d74804efaccbfac774c031bf942f9c97a34a2ec17f2f4144d5c9b6aa05a02

Observation a5feea8d-7175-412c-8958-6aea03dbb2fa · outbound

This paper cites Gradient Guidance for Diffusion Models: An Optimization Perspective.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Gradient Guidance for Diffusion Models: An Optimization Perspective

Reference 22

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no resolver link, observed 2026-08-05T14:25:28.120881Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-05T14:25:28.120881Z digest=sha256:ea14c83655e8abeda020e4dffc6e82680ad19ecd203ac8ccfde6704218719cae

Observation 2060369a-838e-4dec-addc-4ecf849b793b · outbound

This paper cites Training- free multi-objective diffusion model for 3d molecule generation.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Training- free multi-objective diffusion model for 3d molecule generation

Reference 23

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verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.771796Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-05T14:25:28.182243Z digest=sha256:373e5cc05ab686d95dfd6e71d809de6e85463e94103e9ad30773819b7bd38788

Observation a9931f27-b7e7-4b53-a45f-e4ee13bdd8e7 · outbound

This paper cites Posecheck: Generative models for 3d structure-based drug design produce unrealistic poses.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Posecheck: Generative models for 3d structure-based drug design produce unrealistic poses

Reference 24

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.760442Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-05T14:25:28.248770Z digest=sha256:0a5c529a2c5c50858c3730c9e2aada69fc343acb2ecbb980cff29faaeb4dc229

Observation 5057ed33-0ed7-42bc-8f74-c7608534345a · outbound

This paper cites Protein-ligand interaction prior for binding- aware 3d molecule diffusion models.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Protein-ligand interaction prior for binding- aware 3d molecule diffusion models

Reference 25

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verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.749542Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-05T14:25:28.344035Z digest=sha256:6cb42692045acea44ce41df58507b0096b265dbb35baf9183eebea49d3f01f5a

Observation f95ea69a-eb56-4cd1-9aad-f8871d8cf413 · outbound

This paper cites Rational approaches to improving selectivity in drug design.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Rational approaches to improving selectivity in drug design

Reference 26

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.739050Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-05T14:25:28.479751Z digest=sha256:83156446ece8bd12aa5944f16e04d5f0e6814759a959589b64560dddcc29cd88

Observation dfb58398-b767-4cc3-b3ca-7dd20043e546 · outbound

This paper cites A quantitative analysis of kinase inhibitor selectivity.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration A quantitative analysis of kinase inhibitor selectivity

Reference 27

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.726398Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-05T14:25:28.561654Z digest=sha256:afd8e165efc0f2e98c7e60e51cdae9c816e46a563c788a3ebd1aea788b054a8d

Observation 417424e6-728b-4418-a579-dab5d851a69b · outbound

This paper cites Noise2score: tweedie’s approach to self-supervised image denoising without clean images.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Noise2score: tweedie’s approach to self-supervised image denoising without clean images

Reference 28

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verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.714270Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-05T14:25:28.686863Z digest=sha256:a6340ee8d05fab4a19322578119360699c6a3d3c99325500e2920dc0c512302e

Observation aedf26a6-bb0f-469d-9893-d5dd626fa00b · outbound

This paper cites Recent developments in structure-based drug design.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Recent developments in structure-based drug design

Reference 29

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verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.703934Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-05T14:25:28.816716Z digest=sha256:e3257c3df024f06265a461b336562726722df1a078fa9471ab3334bf8ef1e9be

Observation 80d40693-b026-462e-84f1-9895cea71a9e · outbound

This paper cites Lessons learned in empirical scoring with smina from the csar 2011 benchmarking exercise.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Lessons learned in empirical scoring with smina from the csar 2011 benchmarking exercise

Reference 30

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.693739Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-05T14:25:28.931506Z digest=sha256:7dfc579a171d5cdd48fe103365fd30549e6770795feb9132a836fef52621879e

Observation 78adbec1-0a09-401d-832d-bd35e2329254 · outbound

This paper cites A 3d generative model for structure-based drug design.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration A 3d generative model for structure-based drug design

Reference 31

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.683320Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-05T14:25:29.043798Z digest=sha256:76d4a359706564aadb6c1ca57aa0a93f99a4a3a2fa9cefe1e1a34b11e5d97fdf

Observation 76804ed2-7673-4633-aa5f-1b54f711b2a4 · outbound

This paper cites Gnina 1.0: molecular docking with deep learning.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Gnina 1.0: molecular docking with deep learning

Reference 32

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.673382Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-05T14:25:29.127500Z digest=sha256:f678a22aa7c67c130962615b60f9f0939d17ef40a1f106a1ffa7ba550858074c

Observation b03e1972-15a5-48d2-992e-ec8d8ccbcd94 · outbound

This paper cites 3d molecule generation by denoising voxel grids.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration 3d molecule generation by denoising voxel grids

Reference 33

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.661728Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-05T14:25:29.215327Z digest=sha256:7a1b70c270257224f76afcbf651311b1bd9a026a9fd95a298372ee633ecb0d47

Observation 303244e1-558e-445b-8f24-694736762545 · outbound

This paper cites Pocket2mol: Efficient molecular sampling based on 3d protein pockets.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Pocket2mol: Efficient molecular sampling based on 3d protein pockets

Reference 34

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.608080Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-05T14:25:29.285907Z digest=sha256:aa26f2921cb659ab034608008e18104ac91fc5e9c5616e378bd03512ae5d24d0

Observation a3b8f302-f1bd-46a0-82f8-b76b8c1bb878 · outbound

This paper cites MolDiff: Addressing the Atom-Bond Inconsistency Problem in 3D Molecule Diffusion Generation.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration MolDiff: Addressing the Atom-Bond Inconsistency Problem in 3D Molecule Diffusion Generation

Reference 35

Resolution
unresolved
no resolver link, observed 2026-08-05T14:25:29.394587Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-05T14:25:29.394587Z digest=sha256:5df3586675c039ac0946793d074b4f688ac147b151a187a418d46f5d2ea0e4cd

Observation 9bb84b3e-45aa-43dc-be7c-b462c49d6638 · outbound

This paper cites Geometric deep learning for structure-based ligand design.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Geometric deep learning for structure-based ligand design

Reference 36

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.419346Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-05T14:25:29.483161Z digest=sha256:f3c604e91f0c67a19f5ec966d6ecab8b7539c2e45e83eed2645fab346d50ec64

Observation 7229f47d-e83e-4b4f-9ddb-0d06fc7db79a · outbound

This paper cites Molcraft: Structure-based drug design in continuous parameter space.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Molcraft: Structure-based drug design in continuous parameter space

Reference 37

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.243750Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-05T14:25:29.597946Z digest=sha256:9a7610fb0b0286394f1a39050b3c6ca120a6e27451ddefec970e577efcac90e2

Observation 40e7c504-d5ca-44ff-bb22-caf082a2701b · outbound

This paper cites Generating 3d molecules con- ditional on receptor binding sites with deep generative models.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Generating 3d molecules con- ditional on receptor binding sites with deep generative models

Reference 38

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:35.043630Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-05T14:25:29.675003Z digest=sha256:bc7bba56215f10770c76e002dd2de629ee03a0b41d2bf2bf40e4cee77ef1488f

Observation 539b5194-2d31-4058-896d-677fa4aba21d · outbound

This paper cites Structure-based drug design with equivariant diffusion models, 2023.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Structure-based drug design with equivariant diffusion models, 2023

Reference 39

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:34.748192Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-05T14:25:29.751063Z digest=sha256:275bdc8d348e45bb1f679d34a0c41de035f8f7a5112b850e9d813b559dbe070d

Observation 916f60f3-f3d0-4a6a-9a44-818136a284f7 · outbound

This paper cites Structure-based drug design with equivariant diffusion models.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Structure-based drug design with equivariant diffusion models

Reference 40

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:34.474999Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-05T14:25:29.817784Z digest=sha256:4444359b4607de699577367d3ea7a08b233e786b1ad87aecb59459a2e505eeec

Observation 80e0e365-2cc7-4269-af1e-7514071941a0 · outbound

This paper cites On the Pitfalls of Heteroscedastic Uncertainty Estimation with Probabilistic Neural Networks.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration On the Pitfalls of Heteroscedastic Uncertainty Estimation with Probabilistic Neural Networks

Reference 41

Resolution
unresolved
no resolver link, observed 2026-08-05T14:25:29.931810Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-05T14:25:29.931810Z digest=sha256:930b82299fc2d37391dddf489bcbf550ad31e9a642ff60eed96483fc8c90c0b6

Observation 1b4e9a2e-f68c-40de-93cf-2055dd84b713 · outbound

This paper cites Tacogfn: Target-conditioned gflownet for structure-based drug design.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Tacogfn: Target-conditioned gflownet for structure-based drug design

Reference 42

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:34.226009Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-05T14:25:30.047436Z digest=sha256:4009914b874ee3dd3996a199b09949bb50a88d265a9043d3082636d76478b3d3

Observation 0a13d31b-cfbb-42b0-a166-11c282b495d3 · outbound

This paper cites TacoGFN: Target-conditioned GFlowNet for Structure-based Drug Design.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration TacoGFN: Target-conditioned GFlowNet for Structure-based Drug Design

Reference 43

Resolution
verified exact
local_arxiv, observed 2026-08-05T14:25:31.729773Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-05T14:25:30.149222Z digest=sha256:46df197c68597a33d3abbd65952d95402a5073676756bdd41cb52844311e0da0

Observation 95c506fb-3ed8-416f-80e4-08e8f1cb836f · outbound

This paper cites From target to drug: generative modeling for the multimodal structure-based ligand design.Molecular pharmaceutics, 16(10):4282–4291, 2019.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration From target to drug: generative modeling for the multimodal structure-based ligand design.Molecular pharmaceutics, 16(10):4282–4291, 2019

Reference 44

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:34.031008Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-05T14:25:30.244844Z digest=sha256:34d01775af73b388cea0741dbcedec0cb745c92f2724e27a093b0fa1fbb3a337

Observation 496a8d85-c63e-467f-a53e-0a3d90e1669c · outbound

This paper cites Score-Based Generative Modeling through Stochastic Differential Equations.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Score-Based Generative Modeling through Stochastic Differential Equations

Reference 45

Resolution
unresolved
no resolver link, observed 2026-08-05T14:25:30.313220Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-05T14:25:30.313220Z digest=sha256:c4fb217c00cccd440e86f1482428eddc51da1f7d664dbb56e5ff0d16daf4ab70

Observation 8e59c6ef-d98c-4cb6-a9ba-0f55e3d0338d · outbound

This paper cites Unified generative modeling of 3d molecules with bayesian flow networks.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Unified generative modeling of 3d molecules with bayesian flow networks

Reference 46

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:33.873781Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-05T14:25:30.394275Z digest=sha256:ef5ef34f0542150bf2b99659348b465dc76eb4f050eeb0bbe15584b47ccee18e

Observation d1a15dbc-e954-4b4f-b6c3-59c202c6162e · outbound

This paper cites Selective optimization of side activities: another way for drug discovery.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Selective optimization of side activities: another way for drug discovery

Reference 47

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:33.689922Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-05T14:25:30.529703Z digest=sha256:9df17b2b8d9586292803a85d50992617967c4a773e01dda98ad70a9c9fe15f7b

Observation 61daa666-f283-4118-8a0d-e766d873e290 · outbound

This paper cites Learning subpocket prototypes for generalizable structure-based drug design.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Learning subpocket prototypes for generalizable structure-based drug design

Reference 48

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:33.508353Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-05T14:25:30.627743Z digest=sha256:d7a7b61a27a4becf90fb9717e35cf9226789b5b03f6ffcd95ddc4db7742ad295

Observation e3e189fc-c547-47ab-b1ad-4794fd956ab3 · outbound

This paper cites Molecule generation for target pro- tein binding with structural motifs.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Molecule generation for target pro- tein binding with structural motifs

Reference 49

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:33.348023Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-05T14:25:30.699013Z digest=sha256:9461b284a56a195d9daafad350028083654a49bc9e8174f50d65e9cd0fc3a62e

Observation 6fe4ccaf-4330-442b-ad39-5d0e1bbf8f94 · outbound

This paper cites Geometric Deep Learning for Structure-Based Drug Design: A Survey.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Geometric Deep Learning for Structure-Based Drug Design: A Survey

Reference 50

Resolution
verified exact
local_arxiv, observed 2026-08-05T14:25:31.511955Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-05T14:25:30.791122Z digest=sha256:340ae6df862bb8d063f0c1f97626ced2fa3dfcafb34e0603144d866c796264c9

Observation 473074fa-b053-4931-abec-30281d4c7a75 · outbound

This paper cites known unknown.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration known unknown

Reference 51

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:33.150214Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-05T14:25:30.895618Z digest=sha256:3a0675bae27fa2b233d37b4f3f638477970b34d297444a7f17231c2b44f24e3a

Observation 637c19c6-7dac-4ef8-8266-19a9b8d8e8d3 · outbound

This paper cites an unresolved cited work.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Unresolved cited work

Reference 52

Resolution
unresolved
raw_fallback, observed 2026-08-05T14:25:32.974261Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-05T14:25:30.963695Z digest=sha256:648d64c909bc9131978edd4bce5ad18f196fd49d15a2864d5963122124cc1484

Observation b0d98ba8-6690-423c-a925-0a37e10522d4 · outbound

This paper cites an unresolved cited work.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Unresolved cited work

Reference 53

Resolution
unresolved
raw_fallback, observed 2026-08-05T14:25:32.799964Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-05T14:25:31.071125Z digest=sha256:cc1cc3ce893a2a539e28c2bb0317769d7e69fd9610e5a7a60baa6087a13f030e

Observation fdf75671-3e8e-4701-8255-57d0eea07636 · outbound

This paper cites Here h(θi−1, yi, αi) computes the posterior parameter after observing yi with precision αi, given the prior θi−1.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Here h(θi−1, yi, αi) computes the posterior parameter after observing yi with precision αi, given the prior θi−1

Reference 54

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:32.571158Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-05T14:25:31.149120Z digest=sha256:b7db7f9b2812c03d660a3f00079490c8d3f915bbc2430be495e4612506deb638

Observation 5c10dfd4-1644-4947-af80-d0435e69b56d · outbound

This paper cites In contrast, diffusion models explicitly add random noise to samples at each step to maintain stochasticity.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration In contrast, diffusion models explicitly add random noise to samples at each step to maintain stochasticity

Reference 55

Resolution
verified fuzzy
raw_fallback, observed 2026-08-05T14:25:32.356065Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-05T14:25:31.223917Z digest=sha256:1d197851050c3cdea9da21dc960cf11f34aedcc174f5f3178edbfce6544d8ba9

Observation 66be65b3-41ec-4830-943a-e9d2bffc65f8 · outbound

This paper cites an unresolved cited work.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Unresolved cited work

Reference 56

Resolution
unresolved
raw_fallback, observed 2026-08-05T14:25:32.178924Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-05T14:25:31.300974Z digest=sha256:b813f86c8a2bf58385852c6a41c071f9a4b3f6cb8ff4bfcfaf4f1cb9d22e5d0a

Observation 36b354fe-8d4c-4f37-8624-acd9b4bddcb7 · outbound

This paper cites Only Generation Type.

Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration Only Generation Type

Reference 57

Resolution
malformed identifier
raw_fallback, observed 2026-08-05T14:25:31.976708Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-08-05T14:25:31.339421Z digest=sha256:91ba00df9b304c0d1c100120dae6fb2f89854493922f41f3cab4877f83f3d5d7

Pith citing papers

Observation d5d78610-e890-4564-870e-e67b5c4030ad · inbound

Uncertainty-Calibrated Diffusion for Reliable 3D Molecular Graph Generation cites this paper.

Uncertainty-Calibrated Diffusion for Reliable 3D Molecular Graph Generation Controllable 3D Molecular Generation for Structure-Based Drug Design Through Bayesian Flow Networks and Gradient Integration

Reference 7

Resolution
verified exact
arxiv_id, observed 2026-07-01T21:56:16.229264Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-21T06:32:19.484+00:00.

source=pdf_text observed=2026-06-28T15:56:09.312666Z digest=sha256:15eafd64bd3c18f8129051d9d80feb3ba10516f97230d0388fd95f0ca941c9c6