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arxiv: 2605.27770 · v3 · pith:FQJ6PDVInew · submitted 2026-05-26 · ✦ hep-th · cs.LG

Sampling Triangulations and Calabi-Yau Threefolds with Autoregressive GNNs

classification ✦ hep-th cs.LG
keywords dualgnnsamplingtriangulationautoregressivecalabi-yaucircuitsdiagnosticsfine
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We introduce `dualGNN', an autoregressive message-passing GNN for sampling fine, regular triangulations of lattice polytopes. dualGNN operates on a generalization of the dual graph of a triangulation, with edges labeled by `signed circuits' -- combinatorial invariants from the theory of oriented matroids. We show that these circuits are necessary and sufficient to determine a triangulation's regularity from the graph, provided certain magnitude information is retained. The model is independent of the polytope's point count and invariant under its orientation-preserving symmetries ($\mathrm{SL}(d,\mathbb{Z}) \ltimes \mathbb{Z}^d$), and our masking procedure further guarantees that every rollout produces a fine triangulation (in 2D). On unseen polygons with $N_\mathrm{pts} \leq 40$, dualGNN is the only sampler we tested that is consistent with uniform sampling across all our diagnostics (KL divergence from uniformity, collision counts, and sample autocorrelation). The model is small ($\sim92$k parameters) and trains in $\sim7.5$ hours on a single consumer GPU. We apply dualGNN to string theory, sampling Calabi-Yau threefolds uniformly at $h^{1,1}=86$; we also sample CYs at $h^{1,1}=128$, observing no deviations from uniformity, but our diagnostics are weaker here. Code, training scripts, and pretrained models are available at https://github.com/natemacfadden/dualGNN (pip install dualgnn), and dualGNN is integrated into CYTools.

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