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On the design space between molecular mechanics and machine learning force fields

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arxiv 2409.01931 v2 pith:JOCISYKS submitted 2024-09-03 physics.chem-ph cs.AIcs.LGphysics.bio-phphysics.comp-ph

classification physics.chem-phcs.AIcs.LGphysics.bio-phphysics.comp-ph
keywords forcefieldsaccuratechemicalmechanicsaccuracydesignenough
verification ladder T0 review T1 audit T2 compute T3 formal

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abstract

A force field as accurate as quantum mechanics (QM) and as fast as molecular mechanics (MM), with which one can simulate a biomolecular system efficiently enough and meaningfully enough to get quantitative insights, is among the most ardent dreams of biophysicists -- a dream, nevertheless, not to be fulfilled any time soon. Machine learning force fields (MLFFs) represent a meaningful endeavor towards this direction, where differentiable neural functions are parametrized to fit ab initio energies, and furthermore forces through automatic differentiation. We argue that, as of now, the utility of the MLFF models is no longer bottlenecked by accuracy but primarily by their speed (as well as stability and generalizability), as many recent variants, on limited chemical spaces, have long surpassed the chemical accuracy of $1$ kcal/mol -- the empirical threshold beyond which realistic chemical predictions are possible -- though still magnitudes slower than MM. Hoping to kindle explorations and designs of faster, albeit perhaps slightly less accurate MLFFs, in this review, we focus our attention on the design space (the speed-accuracy tradeoff) between MM and ML force fields. After a brief review of the building blocks of force fields of either kind, we discuss the desired properties and challenges now faced by the force field development community, survey the efforts to make MM force fields more accurate and ML force fields faster, envision what the next generation of MLFF might look like.

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Cited by 3 Pith papers

Reviewed papers in the Pith corpus that reference this work. Sorted by Pith novelty score. Full citation record

  1. NepoIP/MM: Towards Accurate Biomolecular Simulation with a Machine Learning/Molecular Mechanics Model Incorporating Polarization Effects

    physics.chem-ph 2025-02 conditional novelty 6.0 of 10

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    physics.chem-ph 2024-11 conditional novelty 6.0 of 10

    A tiny neural network using simple distance-based fingerprints matches the accuracy of million-parameter neural network potentials for small molecules, while evaluating faster and extrapolating more safely.

  3. Towards Large-Scale Condensed Phase Simulations using Machine Learned Energy Functions

    physics.chem-ph 2025-06 conditional novelty 5.0 of 10

    A machine-learned water model combining a CCSD(T)-quality monomer neural network, flexible distributed charges, and cluster-fitted Lennard-Jones terms reproduces many bulk liquid properties in multi-nanosecond simulat...

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