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Generating Normal Networks via Leaf Insertion and Nearest Neighbor Interchange

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arxiv 1906.12053 v3 pith:AZLDIXM5 submitted 2019-06-28 q-bio.PE cs.DSmath.CO

classification q-bio.PEcs.DSmath.CO
keywords networkstaxaphylogenetictree-childnormalreticulatetreesgenerated
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abstract

Galled trees are studied as a recombination model in theoretic population genetics. This class of phylogenetic networks has been generalized to tree-child networks, normal networks and tree-based networks by relaxing a structural condition. Although these networks are simple, their topological structures have yet to be fully understood. It is well-known that all phylogenetic trees on $n$ taxa can be generated by the insertion of the $n$-th taxa to each edge of all the phylogenetic trees on $n-1$ taxa. We prove that all tree-child networks with $k$ reticulate nodes on $n$ taxa can be uniquely generated via three operations from all the tree-child networks with $k-1$ or $k$ reticulate nodes on $n-1$ taxa . An application of this result is found in counting tree-child networks and normal networks. In particular, a simple formula is given for the number of rooted phylogenetic networks with one reticulate node.

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Cited by 1 Pith paper

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  1. Counting Tree-Child Networks and Their Subclasses

    q-bio.PE 2019-08 conditional novelty 7.0 of 10

    Exact enumeration formulas for tree-child networks and galled-tree subclasses are obtained, including a component graph recurrence and new counts on eight taxa.

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