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All that Glisters is not Galled

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arxiv 0904.2448 v1 pith:3LMOXLZ7 submitted 2009-04-16 cs.DM cs.CEq-bio.PE

All that Glisters is not Galled

classification cs.DM cs.CEq-bio.PE
keywords networksgalledcyclesdefinitionsevolutionaryreticulationtreesactual
verification ladder T0 review T1 audit T2 compute T3 formal T4 reserved
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Galled trees, evolutionary networks with isolated reticulation cycles, have appeared under several slightly different definitions in the literature. In this paper we establish the actual relationships between the main four such alternative definitions: namely, the original galled trees, level-1 networks, nested networks with nesting depth 1, and evolutionary networks with arc-disjoint reticulation cycles.

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