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Every paper Pith has read. Search by title, abstract, or pith.
1822 papers in q-bio · page 6
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Magnitude turns cell point patterns into interaction features
Magnitude-Based Features for Multispecies Spatial Data
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Hybrid VAE suggests RHP monomer mixes for protein stabilization
DeepRHP: A Hybrid Variational Autoencoder for Designing Random Heteropolymers as Protein Mimics
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PolyILR aligns orthonormal coordinates with any tree for proportion data
Tree-Structured Orthonormal Decomposition of the Aitchison Simplex
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LLMs match human neural semantics selectively
Large language models selectively converge with human-shared neural semantic representations
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EEG and fNIRS machine learning classifies depressive states in pilot
End-to-End Machine Learning for Depressive State Classification via EEG and fNIRS
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Embeddings turn discrete biome maps into continuous predictors
Continuous biome representations from Earth observation embeddings
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Probabilistic pretraining improves ADME predictions by 7-10%
Probabilistic Contrastive Pretraining for Multi-task ADME Property Prediction
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FlexiBrain ingests native fMRI without standardization steps
FlexiBrain: Resolution-Agnostic Voxel-Level Encoding for Native fMRI
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Assembly theory sizes drug-like space at 10^117 molecules
Elucidating the Size of Chemical Space with Assembly Theory
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Hill functions alone hit sharpness bound n/4
Sharpness characterizes Hill functions
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Masked regression separates local and distributed signals in EEG
Spatially Masked Regression Reveals Local and Distributed Predictability in Electrophysiological Recordings
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Multimodal student model matches teachers at lower cost
GLACIER: A Multimodal Student-Teacher Foundation Model for Molecular Property Prediction
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Single-timepoint NGS fails to predict osimertinib resistance above chance
OncoTraj: a public benchmark for longitudinal resistance prediction in EGFR-mutant non-small-cell lung cancer on osimertinib
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QUIET ranks quiet brain edges for low-energy sync
QUIET: Quantifying Underutilized Influential Edges for Targeted Synchronization
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GRAFT recalibrates neural models across days updating only 9% of parameters
GRAFT: Gain-Recalibrated Adapters for Transformer-Based Neural Population Activity Modeling
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Evolutionary kernels make sparse protein data sufficient for accurate models
Flexible Kernels for Protein Property Prediction
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Helical structure key to modeling DNA shear rupture
A kinetic model of shear-induced rupture of short dsDNA
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Burst probability multiplies goal and state in motor neurons
Bilinear gating of motor primitives: a principle linking dendritic computation to rapid goal-directed adaptation
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Sleep EEG criticality shift predicts later dementia
Sleep EEG Signal Criticality as a Non-Invasive Predictor of Cognitive Decline in Dementia
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France builds national link from microscopes to HPC for bioimage data
From the microscope to High Performance Computing centers, a national effort toward automated data workflows for microscopy facility users in France
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Motion polarizes actin regulator to trigger cell crawling
Spontaneous polarization for protrusion-driven cell crawling
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PDE often chosen over true ABM for wound healing data
Spatial Model Selection and Uncertainty Quantification: Comparing Continuous and Discrete Wound Healing Models
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Omnivory stabilizes marine food webs while longer chains increase chaos
Chaos and stability in the marine trophic network: the importance of interactions over complexity
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COVID models gained data but rarely modeled behavior responses
A systematic review of COVID-19 epidemic models with endogenous human behaviour. What's next?
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Motif-distance distributions rank centromere assemblies
A mathematical framework for centromere-aware evaluation of human genome assemblies
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Competition pins systems to retain only the strongest components
Compositional proofreading through critical self-tuning
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Lower trap dispersal cuts needed trap area to 5 percent
Modeling pest dynamics in trap cropping to improve yield: the effects of attraction, retention, and land allocation
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Structured coupling boosts discrete flows for DNA and peptides
Flexible Flows for Biological Sequence Design
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Inference-time augmentations raise PPG AF detection AUROC up to 8.5%
A Comprehensive Inference-Time Augmentation Framework in Physiological Signals: Application to PPG-Based AF Detection
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Inference augmentations lift PPG AF detection AUROC by up to 8.5%
A Comprehensive Inference-Time Augmentation Framework in Physiological Signals: Application to PPG-Based AF Detection
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YOLO on spectrograms doubles bird call localization accuracy
Time-frequency localization of bird calls in dense soundscapes
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Modular health digital twins couple across scales via seven layers
OmniBioTwin: A System-of-Twinned-Systems Framework for Health Digital Twins
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Coupled domains permit single-morphogen Turing patterns
Mean-field models for morphogenetic processes in physiological contexts
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Uninformed agents delay polarization onset via direction-free dissipation
Stabilizing Role of Uninformed Participants in Collective Decision Making
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Hyperbolic geometry raises associative memory capacity
Hyperbolic Neural Population Geometry Benefits Computation
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MRI multifractality weakens with age and dementia
Multifractal Signatures of Ageing and Dementia Development: A Multifractal Space-Filling Curve Analysis
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Ω test proposed to end arbitrary replicate counts in simulations
When is Enough Enough? A Proposed Termination Point for the Number of Replicates in Computational Simulations
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Optimal matching metric stabilizes instance segmentation scores
Maximum Matching Accuracy: An Instance Segmentation Evaluation Metric Utilizing Globally Optimal Matching
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SAEs reveal features that fire only on hazardous proteins
VFUSE: Virulent Feature Understanding with Sparse autoEncoders
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One smoothness rule builds brain-like maps across senses and thought
Discovering Functionally Selective Brain Regions with a Deep Topographic Multimodal Model
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Segmentation errors propagate in spatial transcriptomics
The Challenge of Cell Segmentation in Spatially Resolved Transcriptomics
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Contrastive pass fixes false causal links from embedding similarities
Correlation Is Not Enough: Embedding Human Metadata for Individual Causal Discovery
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Regulatory priors in attention lift scRNA-seq cell classification
Integrating gene regulatory priors into Transformer attention with scTransformer for interpretable scRNA-seq analysis
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Reachable equilibria control percolation in ecological networks
Percolation and clustering in ecological communities: A dynamical theory
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Pack count and timing adjustment shifts 35% of medication trajectories
Adjusted trajectory of medication exposure taking into account the periodicity of dispensations and the number of dispensed packs and comparative analysis on EFEMERIS database
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Mean fitness relaxes inversely with time after catastrophe
Natural Selection in the Wake of Catastrophe
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MACCS encodings let MLP+TL models flag key drug substructures
A systematic investigation of molecular encoding methods for drug property predictions across neural network and Transformer encoder-based model
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Multi-agent system generates spine MRI reports from multi-sequence scans
A multi-agent system for spine MRI report generation from multi-sequence imaging
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Conformer ensembles cut solvation error 11-13 percent but add nothing else
When Three-Dimensional Conformer Ensembles Improve Molecular Property Prediction Beyond Two-Dimensional Fingerprints: A Systematic Study
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Mean-field trajectories are uniquely determined by their past
Predictable Mean-Field Chaos in Random Recurrent Networks