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Every paper Pith has read. Search by title, abstract, or pith.
148 papers in physics.bio-ph · page 1
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Actin rate rise triggers flocking transition in cell model
Multiscale order, flocking and phenotypic hysteresis in the cellular Potts model of epithelia
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Lanternfly nymphs use capillary rectifier
A developmental switch from capillary rectification to elastic catapult enables honeydew ejection in the spotted lanternfly
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Chromatin fibers steer phase-separated droplets via wetting
A Brownian dynamics study of liquid-liquid phase separation in multi-scale chromatin networks
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Helical twist flips DNA force from attraction to repulsion
Effective interaction between helical bio-molecules
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Nutrient depletion separates sibling bacterial colonies
Kin-ematic Exclusion in Active Matter: Modelling Mutual Inhibition in \textit{Pseudomonas aeruginosa} Sibling Colonies
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Onsager principle yields unified diffuse-domain models for interfaces
Onsager-variational formulation of diffuse-domain methods for computational modeling of microscale fluid-structure interactions
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3D model checks if cell division rules build plant symmetry
3D mechano-geometric multicellular model of apical stem cell-driven plant morphogenesis
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Time discard rule orders population behavior for free
Conditioning as a route to stereotyped behavior in growing populations
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Beverage waste drives top mycoprotein growth rates
Kinetics of Mycoprotein Production from Alternative Carbon Substrates
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Cell divisions suppress avalanches in tissue rearrangements
Cell divisions suppress dynamical correlations in solid tissues
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SLM phase masks emulate real scattering
Towards digital phantoms: emulating scattering with a spatial light modulator
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Acoustic force quantifies single-condensate viscoelasticity
Tracer-free Contactless Acoustic Microrheometry Quantifies Viscoelastic Spectrum of Phase-separated Condensates
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Urea swaps water in BSA shell then lets it return
Molecular Mechanisms of Urea Interactions with Bovine Serum Albumin in an Acid-Expanded Conformation (pH 3.7)
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Persistence speeds one bacterial invasion wave but not the reverse
Travelling waves of invasion in microbial communities with phenotypic switching
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Mobile nuclei shuttle signals like pigeon post in slime mold
Coexistence of trapped and flow-transported nuclei enables fast pigeon post communication across multinucleated cell
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Theory optimizes molecular machine designs via flow networks
Nonequilibrium Theory for Molecular Machine Design
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BP180 homotrimer model stays folded in simulations
A putative, computationally stable structure of homotrimeric BP180/collagen XVII
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Insertion depth drives concentration-dependent bilayer destabilization
Concentration-Dependent Membrane Destabilization in DPPC Bilayers: Distinct Insertion Mechanisms and Stress Redistribution by Chloroform and Alkanols
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Acidic byproducts from sugars limit S
Growth Dynamics of S. aureus with Sugars and Sugar Alcohols in Weak Magnetic Fields
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CISS suppresses triplet formation in heliobacterial photosynthesis
Chiral-Induced Spin Selectivity Regulates Triplet formation in Heliobacterial Photosynthesis
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Cells crawl best at intermediate substrate stiffness
Cellular-scale mechanism of cell crawling responding to substrate stiffness
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Functionalized microelectrodes sense lactate at 10 nM
Indirect Detection of Lactate Through Voltammetry Using Glassy Carbon Microelectrodes
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Extrinsic noise required to explain E
Essential Role of Extrinsic Noise in Models of E. coli Division Control
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Climate anomalies synchronize dengue outbreaks across Brazilian cities
Climate and dengue synchronization in southern Brazil: a municipal analysis with cross-state validation
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Condensin reverses DNA loops via catch-bond intermediate
Loop Extrusion Reversal by Condensin Motor is Mediated by Catch Bonds
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Delay alone creates chimera states then waves in neuron networks
Delay-induced chimera transitions via mode selection in a multiplex FitzHugh Nagumo network
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Genotype decides if heterogeneity amplifies or suppresses selection
Genotype specificity and spatial arrangement govern the direction and magnitude of selection in variable environments
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Minimal model predicts tracer motion in crowded cells
A framework for modeling and inferring tracer diffusion in crowded environments
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Stochastic model predicts worm locomotion from neural signals
Predicting and controlling nonlinear neuro-mechanical locomotion dynamics
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Incommensurable costs fix vascular branching exponents
The Incommensurability Principle in Biological Transport
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Cells transmit molecular info to population size best at intermediate division steps
Optimal information transmission in a sequential model for cell division
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Rod shape and density dictate swarming
Shape anisotropy governs organization of active rods: Swarming, turbulence, flocking, and jamming
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EML operator yields single-block overshoot modules for biology models
Non-Monotone Response Modules and Cascades from the EML Operator for Reduced Models of Biological Dynamics
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Live imaging cuts antiviral testing time by 26 hours
Continuous quantification of viral plaque dynamics using ultra-large-area label-free imaging enables rapid antiviral susceptibility testing
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Lumens act as active balloons in organ formation
Lumens as active balloons: a biological physics review
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Log centroid recovers Kramers scaling until noise boundary in excitable cells
Breakdown of Adiabatic Scaling and Noise-Induced Functional Synchronization in Deeply Quiescent Excitable Systems
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Logarithmic method recovers adiabatic scaling in excitable systems
Breakdown of Adiabatic Scaling and Noise-Induced Functional Synchronization in Deeply Quiescent Excitable Systems
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Pairwise model fits Scrabble graphs and distinguishes languages
Statistical mechanics for Scrabble predicts strategy, entropy and language
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Particle therapy cuts lymphocyte loss by 30% versus photons
Model-aided quantification of patient-specific benefit in mitigating radiation induced lymphopenia by particle therapy of cancer
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Active phase separation propels colloids indefinitely
Propelling catalytic structures using active phase separation
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Neural power cuts entropy per cycle to extend primate lifespan
Neural Investment as an Entropy-Budget Strategy: A Thermodynamic Derivation of Primate Longevity from the Principle of Biological Time Equivalence
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230 species share roughly one billion heartbeats per lifetime
The Lifetime Cardiac-Cycle Invariant in Endothermic Vertebrates: A 230-Species Comparative Dataset, Statistical Validation, and Explicit Falsifiability Criteria
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Cyanobacterial colonies resist lake mixing forces
On Linear and Non-Linear Mechanics of Cyanobacterial Colonies
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Time delay in gravity response drives root oscillations
Delayed control driven oscillations in plant roots
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Peptides differ in virion confinement near cells
Statistical analysis of virion-cell interactions mediated by peptide nanofibrils and peptide amphiphiles using STEM tomography
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Stochastic cell agents reproduce dose-rate effects in particle therapy
A stochastic agent-based extension of the GSM2 model for particle therapy: cell-cycle dynamics, dose-rate dependence, and fractionation effects
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Adhesion strength decides if tissues invade smoothly or fragment
Theory of adhesion-driven self-organisation in growing tissues
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AI learns to design engineered living materials
Can we teach generative artificial intelligence the design language of engineered living materials?
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Light and magnets program tunable random walks in active particles
Programmable Persistent Random Walks in Active Brownian Particles Govern Emergent Dynamics
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Generalized phase rule limits coexisting patterns in active mixtures
Coexistence of patterned phases in chemically active multicomponent mixtures